Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001051A_C01 KMC001051A_c01
(607 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176305.1| disease resistance protein (TIR class), putativ... 44 0.002
ref|NP_194473.1| COP1-interacting protein 7 (CIP7); protein id: ... 43 0.003
ref|NP_568624.1| putative protein; protein id: At5g43310.1 [Arab... 35 0.76
gb|AAG33858.1|AF314535_1 Mcm10p [Xenopus laevis] 34 1.3
dbj|BAC10197.1| putative COP1(CONSTITUTIVE PHOTOMORPHOGENIC1)-in... 34 1.3
>ref|NP_176305.1| disease resistance protein (TIR class), putative; protein id:
At1g61100.1 [Arabidopsis thaliana]
gi|25404308|pir||G96636 hypothetical protein F11P17.17
[imported] - Arabidopsis thaliana
gi|2443891|gb|AAB71484.1| Unknown protein [Arabidopsis
thaliana]
Length = 891
Score = 43.9 bits (102), Expect = 0.002
Identities = 20/40 (50%), Positives = 31/40 (77%)
Frame = -1
Query: 607 PSLPSSPVVQKSKREQEDEIRKKMEEKANERQRRIAERTA 488
P++ S + QK+K E+E+E+RK++E ERQ+RIAER+A
Sbjct: 828 PTVASRTMAQKNKFEKEEEMRKRIENLVMERQKRIAERSA 867
>ref|NP_194473.1| COP1-interacting protein 7 (CIP7); protein id: At4g27430.1,
supported by cDNA: gi_3327867 [Arabidopsis thaliana]
gi|7484877|pir||T08935 COP1-interacting protein 7 -
Arabidopsis thaliana gi|3327868|dbj|BAA31738.1|
COP1-Interacting Protein 7 (CIP7) [Arabidopsis thaliana]
gi|4972068|emb|CAB43875.1| COP1-interacting protein 7
(CIP7) [Arabidopsis thaliana] gi|7269597|emb|CAB81393.1|
COP1-interacting protein 7 (CIP7) [Arabidopsis thaliana]
Length = 1058
Score = 43.1 bits (100), Expect = 0.003
Identities = 21/51 (41%), Positives = 32/51 (62%)
Frame = -1
Query: 607 PSLPSSPVVQKSKREQEDEIRKKMEEKANERQRRIAERTASSGVARGVPKK 455
P+ S V KSK E E+E +K+MEE +RQ+RIAE+++ V+ + K
Sbjct: 746 PAWGSRAAVSKSKSEMEEERKKRMEELLIQRQKRIAEKSSGGSVSSSLASK 796
>ref|NP_568624.1| putative protein; protein id: At5g43310.1 [Arabidopsis thaliana]
Length = 1237
Score = 35.0 bits (79), Expect = 0.76
Identities = 16/34 (47%), Positives = 26/34 (76%)
Frame = -1
Query: 583 VQKSKREQEDEIRKKMEEKANERQRRIAERTASS 482
+QK K+E+E+E RK++E ERQ+RIA ++ S+
Sbjct: 748 LQKMKKEKEEEDRKRIEALKIERQKRIASKSNSA 781
>gb|AAG33858.1|AF314535_1 Mcm10p [Xenopus laevis]
Length = 860
Score = 34.3 bits (77), Expect = 1.3
Identities = 24/63 (38%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Frame = -1
Query: 595 SSPVVQ-KSKREQEDEIRK---KMEEKANERQRRIAERTASSGVARGVPKKDQIE-GKTA 431
SS V Q KSK E EDE+RK +M++ + Q+ +T+S G + P+ ++ GKT+
Sbjct: 92 SSSVCQEKSKDELEDELRKMQAQMKKLQEQLQKTALAKTSSPGNPKKSPENKMVQSGKTS 151
Query: 430 RVS 422
R S
Sbjct: 152 RTS 154
>dbj|BAC10197.1| putative COP1(CONSTITUTIVE PHOTOMORPHOGENIC1)-interacting protein 7
(CIP7) [Oryza sativa (japonica cultivar-group)]
Length = 882
Score = 34.3 bits (77), Expect = 1.3
Identities = 16/31 (51%), Positives = 23/31 (73%)
Frame = -1
Query: 583 VQKSKREQEDEIRKKMEEKANERQRRIAERT 491
+QK K+EQE+E K++E ERQ+RIA R+
Sbjct: 778 LQKLKKEQEEEQMKRLERLKLERQKRIAARS 808
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 489,891,530
Number of Sequences: 1393205
Number of extensions: 10048484
Number of successful extensions: 33436
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 30544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33013
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
