Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001048A_C01 KMC001048A_c01
(753 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK00108.1|AF200402_1 cytochrome oxidase subunit I (COI) [Kra... 33 5.7
pir||T13862 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain ... 32 9.8
gb|AAF77377.1| NADH dehydrogenase subunit 5 [Drosophila simulans... 32 9.8
gb|AAF77284.1| NADH dehydrogenase subunit 5 [Drosophila sechellia] 32 9.8
gb|AAF77415.1| NADH dehydrogenase subunit 5 [Drosophila simulans... 32 9.8
>gb|AAK00108.1|AF200402_1 cytochrome oxidase subunit I (COI) [Kradibia wassae]
Length = 498
Score = 32.7 bits (73), Expect = 5.7
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 420 VLMLQLYQLLLSKELLYLYVSAVNNSLEWSFPTIP 524
+ M LY+ LS + L+ +A+N S+EWS PT P
Sbjct: 449 IFMFALYESFLSNRKV-LFSNALNTSIEWSTPTFP 482
>pir||T13862 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 5 - Carabus
conciliator mitochondrion (fragment)
gi|1438083|dbj|BAA08879.1| NADH dehydrogenase subunit 5
[Carabus conciliator]
Length = 355
Score = 32.0 bits (71), Expect = 9.8
Identities = 16/44 (36%), Positives = 26/44 (58%), Gaps = 4/44 (9%)
Frame = -1
Query: 417 RWAMQVAKDSLSFSDYSYLF---WFLLIVSPFGL-YAPTEANYD 298
+++M +SL F +YSY F WF+ +SPF + Y P +Y+
Sbjct: 255 KFSMSWVSNSLKFYNYSYFFGFMWFMPHISPFSMNYIPLVLSYN 298
>gb|AAF77377.1| NADH dehydrogenase subunit 5 [Drosophila simulans]
gi|8573548|gb|AAF77388.1| NADH dehydrogenase subunit 5
[Drosophila simulans] gi|8573563|gb|AAF77402.1| NADH
dehydrogenase subunit 5 [Drosophila simulans]
Length = 573
Score = 32.0 bits (71), Expect = 9.8
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +1
Query: 439 ISYYYPKSSSIYMYLLSTIV*NGPFLPYLNPYELFFY 549
+S Y + S++MY LST + + F+PY++ Y + FY
Sbjct: 472 LSNLYFLNKSLFMYNLSTFLGSMWFMPYISTYGMIFY 508
>gb|AAF77284.1| NADH dehydrogenase subunit 5 [Drosophila sechellia]
Length = 573
Score = 32.0 bits (71), Expect = 9.8
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +1
Query: 439 ISYYYPKSSSIYMYLLSTIV*NGPFLPYLNPYELFFY 549
+S Y + S++MY LST + + F+PY++ Y + FY
Sbjct: 472 LSNLYFLNKSLFMYNLSTFLGSMWFMPYISTYGMIFY 508
>gb|AAF77415.1| NADH dehydrogenase subunit 5 [Drosophila simulans]
gi|8573591|gb|AAF77428.1| NADH dehydrogenase subunit 5
[Drosophila simulans] gi|8573619|gb|AAF77454.1| NADH
dehydrogenase subunit 5 [Drosophila simulans]
Length = 573
Score = 32.0 bits (71), Expect = 9.8
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +1
Query: 439 ISYYYPKSSSIYMYLLSTIV*NGPFLPYLNPYELFFY 549
+S Y + S++MY LST + + F+PY++ Y + FY
Sbjct: 472 LSNLYFLNKSLFMYNLSTFLGSMWFMPYISTYGMIFY 508
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 602,679,917
Number of Sequences: 1393205
Number of extensions: 12579572
Number of successful extensions: 26912
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 26077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26908
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 36595604110
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
