Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001046A_C01 KMC001046A_c01
(556 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_192654.1| putative protein; protein id: At4g09150.1 [Arab... 88 8e-17
ref|NP_173706.1| unknown protein; protein id: At1g22930.1 [Arabi... 81 7e-15
gb|EAA04848.1| agCP4180 [Anopheles gambiae str. PEST] 36 0.36
gb|AAN04143.1| Putative reverse transcriptase [Oryza sativa] gi|... 35 0.61
pir||A60095 larval glue protein Lgp-1 precursor - fruit fly (Dro... 35 0.61
>ref|NP_192654.1| putative protein; protein id: At4g09150.1 [Arabidopsis thaliana]
gi|25372860|pir||G85092 hypothetical protein AT4g09150
[imported] - Arabidopsis thaliana
gi|7267558|emb|CAB78039.1| putative protein [Arabidopsis
thaliana]
Length = 1097
Score = 87.8 bits (216), Expect = 8e-17
Identities = 45/115 (39%), Positives = 71/115 (61%)
Frame = -2
Query: 555 ANIQDIVEVICNLPTVDGEEDAGKVQSRKEVAARMIGKSLQAGDVVFERVFSAVYSAMRG 376
A + +I+E + L D+ +++K+V A M+ KSLQAGD VF V +Y A+R
Sbjct: 984 AGLSEIMETLSELL------DSNDAETKKQVIANMLVKSLQAGDAVFTHVSQTIYLAIRA 1037
Query: 375 VVLGGSGTRGRKLAEMALVKVGGGVLTEKVVEAAGILIVAATISVNVHEPWYKYL 211
VL G+ T+ ++L E L K+G L++KV+E + IL++ AT+S +VH WY+ L
Sbjct: 1038 AVLAGNNTKRKQLVETMLRKIGAASLSDKVIEVSDILVLVATVSRSVHGLWYEEL 1092
>ref|NP_173706.1| unknown protein; protein id: At1g22930.1 [Arabidopsis thaliana]
gi|25372861|pir||D86363 hypothetical protein F19G10.11 -
Arabidopsis thaliana gi|2462826|gb|AAB72161.1| unknown
protein [Arabidopsis thaliana] gi|24030363|gb|AAN41345.1|
unknown protein [Arabidopsis thaliana]
Length = 1131
Score = 81.3 bits (199), Expect = 7e-15
Identities = 46/115 (40%), Positives = 66/115 (57%), Gaps = 12/115 (10%)
Frame = -2
Query: 519 LPTVDGEEDAGKVQ-----------SRKEVAARMIGKSLQAGDVVFERVFSAVYSAMRGV 373
L +DG+E AG + +K++ ++GKSL G+ V+ERV S +Y A RG
Sbjct: 1013 LELLDGKEGAGLTEIIETTMSEEDGEKKKMMRGLLGKSLGEGNTVYERVTSCIYKAARGA 1072
Query: 372 VLGGSGTRGRKLAEMALVKV-GGGVLTEKVVEAAGILIVAATISVNVHEPWYKYL 211
+L G+G G+++ E + KV GGG L E+V+E A L V A +SV VH PW L
Sbjct: 1073 LLAGNGENGKRMVETEMKKVGGGGGLKERVLETARALGVVACVSVRVHGPWLTQL 1127
>gb|EAA04848.1| agCP4180 [Anopheles gambiae str. PEST]
Length = 483
Score = 35.8 bits (81), Expect = 0.36
Identities = 24/75 (32%), Positives = 34/75 (45%)
Frame = +2
Query: 245 DIVAATIKIPAASTTFSVRTPPPTFTRAISANFLPRVPLPPSTTPRIAE*TALNTLSNTT 424
D +++T K+P A TT V PPPT R P T R++E T +++ S T
Sbjct: 310 DEISSTPKLPKARTTIVVPEPPPT-----------RQPAEEEVTMRLSESTTVSSSSTTL 358
Query: 425 SPACKLFPIILAATS 469
P P + A S
Sbjct: 359 PPTVAHRPRSIGAQS 373
>gb|AAN04143.1| Putative reverse transcriptase [Oryza sativa]
gi|22655786|gb|AAN04203.1| Putative reverse
transcriptase [Oryza sativa (japonica cultivar-group)]
Length = 773
Score = 35.0 bits (79), Expect = 0.61
Identities = 24/73 (32%), Positives = 36/73 (48%), Gaps = 4/73 (5%)
Frame = +2
Query: 248 IVAATIKIPAASTT---FSVRTPPPTFTRAISANFLPRVPLPPSTTPRIAE*TALNTLSN 418
++A PA STT + +PP T +A FLPR+ P +P +A T+ + +
Sbjct: 237 VLALEASSPAKSTTPLLAATASPPATTPPPPAAPFLPRMSSPGGASPVLAAPTSWDASPS 296
Query: 419 TTSPA-CKLFPII 454
T SP C L P +
Sbjct: 297 TPSPVRCPLSPAL 309
>pir||A60095 larval glue protein Lgp-1 precursor - fruit fly (Drosophila
virilis) gi|433482|emb|CAA53796.1| major larval glue
protein [Drosophila virilis] gi|450903|emb|CAA82672.1|
glue protein [Drosophila virilis]
gi|1091592|prf||2021274B glue protein
Length = 232
Score = 35.0 bits (79), Expect = 0.61
Identities = 25/93 (26%), Positives = 36/93 (37%)
Frame = +2
Query: 260 TIKIPAASTTFSVRTPPPTFTRAISANFLPRVPLPPSTTPRIAE*TALNTLSNTTSPACK 439
T P +TT + TP PT T + P P +TT R T T TT+P
Sbjct: 66 TTTTPCPTTTTTTTTPCPTTTTTRTTTTTTTTPCPTTTTTRTTT-TPTTTTRTTTTPTTT 124
Query: 440 LFPIILAATSFLD*TFPASSSPSTVGKLQITST 538
T+ T +++P+T + T T
Sbjct: 125 TRTTTTPTTTTRTTTTRTTTTPTTTTRTTTTPT 157
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 477,979,934
Number of Sequences: 1393205
Number of extensions: 10680362
Number of successful extensions: 32288
Number of sequences better than 10.0: 63
Number of HSP's better than 10.0 without gapping: 30463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32134
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
