Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001039A_C01 KMC001039A_c01
(538 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC54550.1| histone 1 [Drosophila simulans] 34 0.98
ref|XP_146153.2| similar to gastric mucin-like protein [Mus musc... 33 1.7
emb|CAD54411.1| secreted gel-forming mucin [Mus musculus] 33 1.7
gb|AAO47735.1| MUC6 [Mus musculus] 33 1.7
ref|NP_055597.1| armadillo repeat protein ALEX2 [Homo sapiens] g... 32 4.8
>dbj|BAC54550.1| histone 1 [Drosophila simulans]
Length = 256
Score = 34.3 bits (77), Expect = 0.98
Identities = 17/57 (29%), Positives = 30/57 (51%)
Frame = -2
Query: 537 DKSISTPKTPVSATPNSSNAKGTPPLENGKGTTKARRLSYPTTEKSVVQVVEAVHSN 367
D +++TP +PV+ATP + K +G TKA++ + + Q+V+A N
Sbjct: 3 DSAVATPASPVAATPATVEKKVVQKKASGSAGTKAKKATATPSHPPTQQMVDASIKN 59
>ref|XP_146153.2| similar to gastric mucin-like protein [Mus musculus]
Length = 2877
Score = 33.5 bits (75), Expect = 1.7
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Frame = -2
Query: 522 TPKTPVSATPNS----SNAKGTPPLENGKGTTKARRLSYPTTEKSVVQVVEAVHSNG 364
T TP+ AT NS GTPP+ GTT + + T S V V H+ G
Sbjct: 1928 TQSTPIPATTNSLMTTGGLTGTPPVHTTSGTTSSPQTPRTTHPFSTVAVSNTKHTTG 1984
Score = 32.7 bits (73), Expect = 2.8
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Frame = -2
Query: 534 KSISTPKTPVSATPNS----SNAKGTPPLENGKGTTKARRLSYPTTEKSVVQVVEAVHSN 367
+ ++T TP+ A NS GTPP+ GTT + + T S V V H+
Sbjct: 1582 EGLNTQSTPIPAITNSLMTTGGLTGTPPVHTTSGTTSSPQTPRTTHPFSTVAVSNTKHTT 1641
Query: 366 G 364
G
Sbjct: 1642 G 1642
>emb|CAD54411.1| secreted gel-forming mucin [Mus musculus]
Length = 1414
Score = 33.5 bits (75), Expect = 1.7
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Frame = -2
Query: 522 TPKTPVSATPNS----SNAKGTPPLENGKGTTKARRLSYPTTEKSVVQVVEAVHSNG 364
T TP+ AT NS GTPP+ GTT + + T S V V H+ G
Sbjct: 466 TQSTPIPATTNSLMTTGGLTGTPPVHTTSGTTSSPQTPRTTHPFSTVAVSNTKHTTG 522
Score = 32.7 bits (73), Expect = 2.8
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Frame = -2
Query: 534 KSISTPKTPVSATPNS----SNAKGTPPLENGKGTTKARRLSYPTTEKSVVQVVEAVHSN 367
+ ++T TP+ A NS GTPP+ GTT + + T S V V H+
Sbjct: 120 EGLNTQSTPIPAITNSLMTTGGLTGTPPVHTTSGTTSSPQTPRTTHPFSTVAVSNTKHTT 179
Query: 366 G 364
G
Sbjct: 180 G 180
>gb|AAO47735.1| MUC6 [Mus musculus]
Length = 2850
Score = 33.5 bits (75), Expect = 1.7
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Frame = -2
Query: 522 TPKTPVSATPNS----SNAKGTPPLENGKGTTKARRLSYPTTEKSVVQVVEAVHSNG 364
T TP+ AT NS GTPP+ GTT + + T S V V H+ G
Sbjct: 1901 TQSTPIPATTNSLMTTGGLTGTPPVHTTSGTTSSPQTPRTTHPFSTVAVSNTKHTTG 1957
Score = 32.7 bits (73), Expect = 2.8
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 4/61 (6%)
Frame = -2
Query: 534 KSISTPKTPVSATPNS----SNAKGTPPLENGKGTTKARRLSYPTTEKSVVQVVEAVHSN 367
+ ++T TP+ A NS GTPP+ GTT + + T S V V H+
Sbjct: 1555 EGLNTQSTPIPAITNSLMTTGGLTGTPPVHTTSGTTSSPQTPRTTHPFSTVAVSNTKHTT 1614
Query: 366 G 364
G
Sbjct: 1615 G 1615
>ref|NP_055597.1| armadillo repeat protein ALEX2 [Homo sapiens]
gi|7512999|pir||T00084 hypothetical protein KIAA0512 -
human gi|3043548|dbj|BAA25438.1| KIAA0512 protein [Homo
sapiens] gi|15214810|gb|AAH12541.1|AAH12541 Similar to
armadillo repeat protein ALEX2 [Homo sapiens]
gi|16198491|gb|AAH15926.1|AAH15926 armadillo repeat
protein ALEX2 [Homo sapiens]
Length = 632
Score = 32.0 bits (71), Expect = 4.8
Identities = 17/48 (35%), Positives = 25/48 (51%)
Frame = -2
Query: 525 STPKTPVSATPNSSNAKGTPPLENGKGTTKARRLSYPTTEKSVVQVVE 382
+TP A P +++A G P GKG T++R +KS V+V E
Sbjct: 259 ATPGAHTGAIPKATSATGAVPKGGGKGVTRSRNGGKGKGKKSKVEVDE 306
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 441,784,662
Number of Sequences: 1393205
Number of extensions: 9000968
Number of successful extensions: 24174
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 23173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24152
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
