Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001035A_C01 KMC001035A_c01
(784 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM63662.1| zinc-finger protein (C-terminal), putative [Arabi... 101 1e-20
ref|NP_173239.1| zinc-finger protein (C-terminal), putative; pro... 101 1e-20
pir||A86315 F2H15.19 protein - Arabidopsis thaliana gi|9665074|g... 99 7e-20
ref|NP_177517.1| putative RING zinc finger protein; protein id: ... 95 1e-18
ref|NP_199108.1| putative protein; protein id: At5g42940.1, supp... 82 9e-15
>gb|AAM63662.1| zinc-finger protein (C-terminal), putative [Arabidopsis thaliana]
Length = 368
Score = 101 bits (252), Expect = 1e-20
Identities = 55/127 (43%), Positives = 78/127 (61%), Gaps = 3/127 (2%)
Frame = -3
Query: 689 PETYYVRDSEIIMLQGSIVR---LNSQDRHRDLRLDVDNMSYEQLLELSERIGYVSTGLK 519
P +Y +E+ MLQ V +S+D + +LRLDVD+MSYEQLLEL +RIGYV+TGLK
Sbjct: 237 PRSYPDDLTEMRMLQNGFVMGRITDSRDNYHELRLDVDSMSYEQLLELGDRIGYVNTGLK 296
Query: 518 EEEMRKNIRKLQISDDASQVDKNCTICQDRV*SRRGNWETLTVVTAITISAYSQWVEQKN 339
E E+ + + K++ S + VD+ C+ICQD R L + + QW+ +KN
Sbjct: 297 ESEIHRCLGKIKPSVSHTLVDRKCSICQDEY-EREDEVGELNCGHSFHVHCVKQWLSRKN 355
Query: 338 FCPVCKR 318
CPVCK+
Sbjct: 356 ACPVCKK 362
>ref|NP_173239.1| zinc-finger protein (C-terminal), putative; protein id:
At1g17970.1, supported by cDNA: 261272., supported by
cDNA: gi_16226278 [Arabidopsis thaliana]
gi|16226279|gb|AAL16122.1|AF428290_1 At1g17970/F2H15_16
[Arabidopsis thaliana] gi|21436039|gb|AAM51597.1|
At1g17970/F2H15_16 [Arabidopsis thaliana]
Length = 368
Score = 101 bits (252), Expect = 1e-20
Identities = 55/127 (43%), Positives = 78/127 (61%), Gaps = 3/127 (2%)
Frame = -3
Query: 689 PETYYVRDSEIIMLQGSIVR---LNSQDRHRDLRLDVDNMSYEQLLELSERIGYVSTGLK 519
P +Y +E+ MLQ V +S+D + +LRLDVD+MSYEQLLEL +RIGYV+TGLK
Sbjct: 237 PRSYPDDLTEMRMLQNGFVMGRITDSRDNYHELRLDVDSMSYEQLLELGDRIGYVNTGLK 296
Query: 518 EEEMRKNIRKLQISDDASQVDKNCTICQDRV*SRRGNWETLTVVTAITISAYSQWVEQKN 339
E E+ + + K++ S + VD+ C+ICQD R L + + QW+ +KN
Sbjct: 297 ESEIHRCLGKIKPSVSHTLVDRKCSICQDEY-EREDEVGELNCGHSFHVHCVKQWLSRKN 355
Query: 338 FCPVCKR 318
CPVCK+
Sbjct: 356 ACPVCKK 362
>pir||A86315 F2H15.19 protein - Arabidopsis thaliana
gi|9665074|gb|AAF97276.1|AC034106_19 Contains similarity
to RING-H2 finger protein RHG1a (partial) from
Arabidopsis thaliana gb|AF079183 and contains a Zinc
finger (C3HC4 type) PF|00097 domain. EST gb|AV522036
comes from this gene
Length = 383
Score = 99.0 bits (245), Expect = 7e-20
Identities = 52/115 (45%), Positives = 72/115 (62%), Gaps = 3/115 (2%)
Frame = -3
Query: 653 MLQGSIVR---LNSQDRHRDLRLDVDNMSYEQLLELSERIGYVSTGLKEEEMRKNIRKLQ 483
MLQ V +S+D + +LRLDVD+MSYEQLLEL +RIGYV+TGLKE E+ + + K++
Sbjct: 264 MLQNGFVMGRITDSRDNYHELRLDVDSMSYEQLLELGDRIGYVNTGLKESEIHRCLGKIK 323
Query: 482 ISDDASQVDKNCTICQDRV*SRRGNWETLTVVTAITISAYSQWVEQKNFCPVCKR 318
S + VD+ C+ICQD R L + + QW+ +KN CPVCK+
Sbjct: 324 PSVSHTLVDRKCSICQDEY-EREDEVGELNCGHSFHVHCVKQWLSRKNACPVCKK 377
>ref|NP_177517.1| putative RING zinc finger protein; protein id: At1g73760.1
[Arabidopsis thaliana] gi|25406292|pir||H96764 protein
RING zinc finger protein F25P22.18 [imported] -
Arabidopsis thaliana
gi|12324210|gb|AAG52076.1|AC012679_14 putative RING zinc
finger protein; 69105-67310 [Arabidopsis thaliana]
Length = 367
Score = 94.7 bits (234), Expect = 1e-18
Identities = 52/121 (42%), Positives = 78/121 (63%), Gaps = 4/121 (3%)
Frame = -3
Query: 665 SEIIMLQGSIVR---LNSQDRHRDLRLDVDNMSYEQLLELSERIGYVSTGLKEEEMRKNI 495
+E++M+Q V L+S D+ RD+RL+VDNM+YEQLLEL ERIG+V+TGL E++++ +
Sbjct: 243 AEMMMMQNGFVMGGVLSSFDQFRDMRLNVDNMTYEQLLELGERIGHVNTGLTEKQIKSCL 302
Query: 494 RKLQ-ISDDASQVDKNCTICQDRV*SRRGNWETLTVVTAITISAYSQWVEQKNFCPVCKR 318
RK++ D + D+ C ICQD ++ E L I +QW+ +KN CPVCK
Sbjct: 303 RKVKPCRQDTTVADRKCIICQDEYEAKDEVGE-LRCGHRFHIDCVNQWLVRKNSCPVCKT 361
Query: 317 L 315
+
Sbjct: 362 M 362
>ref|NP_199108.1| putative protein; protein id: At5g42940.1, supported by cDNA:
gi_18087615 [Arabidopsis thaliana]
gi|9758583|dbj|BAB09196.1| contains similarity to RING
zinc finger protein~gene_id:MBD2.14 [Arabidopsis
thaliana] gi|18087616|gb|AAL58938.1|AF462851_1
AT5g42940/MBD2_14 [Arabidopsis thaliana]
gi|28416527|gb|AAO42794.1| At5g42940/MBD2_14
[Arabidopsis thaliana]
Length = 691
Score = 82.0 bits (201), Expect = 9e-15
Identities = 47/137 (34%), Positives = 74/137 (53%), Gaps = 4/137 (2%)
Frame = -3
Query: 719 ENVFTPPFEEPETYYVRDSEIIMLQGSIV--RLNSQDRHRDLRLDVDNMSYEQLLELSER 546
+NV + +R ++++L S++ DR+RD+RLDVDNMSYE+LL L ER
Sbjct: 543 QNVLDVMRRDANNNNLRLEDVMLLNHSVLFDGATGHDRYRDMRLDVDNMSYEELLALEER 602
Query: 545 IGYVSTGLKEEEMRKNI--RKLQISDDASQVDKNCTICQDRV*SRRGNWETLTVVTAITI 372
IG V TG+ EE + + RK + + + Q + C +CQ+ + + TL
Sbjct: 603 IGDVCTGVNEETISNRLKQRKYKSNTKSPQDAEPCCVCQEEY-TEGEDMGTLECGHEFHS 661
Query: 371 SAYSQWVEQKNFCPVCK 321
+W++QKN CP+CK
Sbjct: 662 QCIKEWLKQKNLCPICK 678
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 653,150,195
Number of Sequences: 1393205
Number of extensions: 13931961
Number of successful extensions: 37575
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 35842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37408
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 38935490438
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
