Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001033A_C02 KMC001033A_c02
(970 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_085475.1| orf107a [Arabidopsis thaliana] gi|1785675|emb|C... 83 5e-17
ref|NP_760124.1| Unknown [Vibrio vulnificus CMCP6] gi|27364802|r... 51 3e-05
ref|NP_759470.1| Unknown [Vibrio vulnificus CMCP6] gi|27364365|r... 51 3e-05
ref|NP_616552.1| predicted protein [Methanosarcina acetivorans s... 36 0.78
gb|AAD32929.1|AC004135_4 T17H7.4 [Arabidopsis thaliana] 36 0.78
>ref|NP_085475.1| orf107a [Arabidopsis thaliana] gi|1785675|emb|CAA69780.1| orf107a
[Arabidopsis thaliana]
Length = 107
Score = 82.8 bits (203), Expect(2) = 5e-17
Identities = 36/38 (94%), Positives = 36/38 (94%)
Frame = -1
Query: 166 MFQFAKFEKSKERRLAAELGYGFPIGDPWITDGISPWP 53
MFQFAKF KSKERRLA ELGYGFPIGDPWITDGISPWP
Sbjct: 1 MFQFAKFSKSKERRLATELGYGFPIGDPWITDGISPWP 38
Score = 27.7 bits (60), Expect(2) = 5e-17
Identities = 11/16 (68%), Positives = 13/16 (80%)
Frame = -2
Query: 48 SSESVLPSLCPGARPI 1
+SESVLPS CPG P+
Sbjct: 40 ASESVLPSQCPGIHPM 55
>ref|NP_760124.1| Unknown [Vibrio vulnificus CMCP6] gi|27364802|ref|NP_760330.1|
Unknown [Vibrio vulnificus CMCP6]
gi|27367802|ref|NP_763329.1| Unknown [Vibrio vulnificus
CMCP6] gi|27359375|gb|AAO08319.1|AE016813_71 Unknown
[Vibrio vulnificus CMCP6]
gi|27360715|gb|AAO09651.1|AE016800_256 Unknown [Vibrio
vulnificus CMCP6] gi|27360947|gb|AAO09857.1|AE016801_176
Unknown [Vibrio vulnificus CMCP6]
Length = 105
Score = 50.8 bits (120), Expect = 3e-05
Identities = 22/33 (66%), Positives = 26/33 (78%)
Frame = -1
Query: 601 GFFSPFPHGTCTLSVIEEYLGLEGGPPFSRKSD 503
GFFSPFPHGT +LSV +EYL LE GPP R+ +
Sbjct: 43 GFFSPFPHGTGSLSVSQEYLALEDGPPIFRQDN 75
>ref|NP_759470.1| Unknown [Vibrio vulnificus CMCP6] gi|27364365|ref|NP_759893.1|
Unknown [Vibrio vulnificus CMCP6]
gi|27364371|ref|NP_759899.1| Unknown [Vibrio vulnificus
CMCP6] gi|27364410|ref|NP_759938.1| Unknown [Vibrio
vulnificus CMCP6] gi|27364494|ref|NP_760022.1| Unknown
[Vibrio vulnificus CMCP6] gi|27364876|ref|NP_760404.1|
Unknown [Vibrio vulnificus CMCP6]
gi|27360059|gb|AAO08997.1|AE016798_157 Unknown [Vibrio
vulnificus CMCP6] gi|27360484|gb|AAO09420.1|AE016800_25
Unknown [Vibrio vulnificus CMCP6]
gi|27360490|gb|AAO09426.1|AE016800_31 Unknown [Vibrio
vulnificus CMCP6] gi|27360529|gb|AAO09465.1|AE016800_70
Unknown [Vibrio vulnificus CMCP6]
gi|27360613|gb|AAO09549.1|AE016800_154 Unknown [Vibrio
vulnificus CMCP6] gi|27361021|gb|AAO09931.1|AE016801_250
Unknown [Vibrio vulnificus CMCP6]
Length = 105
Score = 50.8 bits (120), Expect = 3e-05
Identities = 22/33 (66%), Positives = 26/33 (78%)
Frame = -1
Query: 601 GFFSPFPHGTCTLSVIEEYLGLEGGPPFSRKSD 503
GFFSPFPHGT +LSV +EYL LE GPP R+ +
Sbjct: 43 GFFSPFPHGTGSLSVSQEYLALEDGPPIFRQDN 75
>ref|NP_616552.1| predicted protein [Methanosarcina acetivorans str. C2A]
gi|19915496|gb|AAM05032.1| predicted protein
[Methanosarcina acetivorans str. C2A]
Length = 125
Score = 36.2 bits (82), Expect = 0.78
Identities = 17/27 (62%), Positives = 19/27 (69%)
Frame = -1
Query: 226 RSRSPLLTGSRLISLPLATKMFQFAKF 146
R SPLLT S+LIS P T+MFQF F
Sbjct: 65 RFHSPLLTASQLISFPAPTEMFQFGAF 91
>gb|AAD32929.1|AC004135_4 T17H7.4 [Arabidopsis thaliana]
Length = 82
Score = 36.2 bits (82), Expect = 0.78
Identities = 18/27 (66%), Positives = 20/27 (73%)
Frame = -2
Query: 834 LDRSVSGQIGRTRRFHL*KAPTPNGLS 754
LD + I RTRRFHL KAPTPNGL+
Sbjct: 55 LDGPLCFLIVRTRRFHLWKAPTPNGLT 81
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 844,712,080
Number of Sequences: 1393205
Number of extensions: 18643489
Number of successful extensions: 44760
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 43183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44754
length of database: 448,689,247
effective HSP length: 123
effective length of database: 277,325,032
effective search space used: 55187681368
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
