Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001028A_C01 KMC001028A_c01
(559 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B86194 hypothetical protein [imported] - Arabidopsis thalia... 128 5e-29
ref|NP_563753.1| tat-binding protein, putative; protein id: At1g... 128 5e-29
gb|AAL10476.1| At1g05910/T20M3_16 [Arabidopsis thaliana] gi|2736... 128 5e-29
gb|AAN41251.1| bromodomain protein 103 [Zea mays] 92 3e-18
sp|P27625|RPC1_PLAFA DNA-DIRECTED RNA POLYMERASE III LARGEST SUB... 40 0.025
>pir||B86194 hypothetical protein [imported] - Arabidopsis thaliana
gi|6850321|gb|AAF29398.1|AC009999_18 Contains similarity
to YTA7 ATPase gene from Saccharomyces cerevisiae
gb|X81072, and contains Bromodomain PF|00439, AAA
PF|00004, and Sigma-54 PF|00158 transcription factor
domains. [Arabidopsis thaliana]
Length = 1251
Score = 128 bits (321), Expect = 5e-29
Identities = 74/167 (44%), Positives = 99/167 (58%), Gaps = 11/167 (6%)
Frame = -1
Query: 559 SARLRHVQPEVNMDKSYEALKRTKKTSDFPAEDKSQEESIPSKSSQEHQTSDM---DSER 389
SARLR+VQPEVN+D+ YE LK+ KKT+D + D + ++S S QE + D S
Sbjct: 1085 SARLRNVQPEVNLDRDYEGLKKPKKTTDAVSIDSAADKSQNQDSGQEMPSPDAANPQSAA 1144
Query: 388 PEPVTIDGN------SNGTGTNSFADDSSLNDVTMLDDEFSSQVESVKQHFVKRSENYSL 227
P P D S + DS D E SS+ ESVK F++R++NYS+
Sbjct: 1145 PSPTDGDREDQSEPPSKEASAEDMSGDSCKGPAAKSDKEISSRTESVKGVFMERTDNYSI 1204
Query: 226 PQLERIYTRIMKGVFETKEKGMNDDD--IKTSVVRFLLKFVEDDANF 92
PQ+ER+YTRIMKGV ET +KG+ DDD K S++RFL +F + ANF
Sbjct: 1205 PQMERLYTRIMKGVLETLDKGLRDDDNNPKHSILRFLSEFAQHQANF 1251
>ref|NP_563753.1| tat-binding protein, putative; protein id: At1g05910.1, supported by
cDNA: gi_15983758 [Arabidopsis thaliana]
Length = 1210
Score = 128 bits (321), Expect = 5e-29
Identities = 74/167 (44%), Positives = 99/167 (58%), Gaps = 11/167 (6%)
Frame = -1
Query: 559 SARLRHVQPEVNMDKSYEALKRTKKTSDFPAEDKSQEESIPSKSSQEHQTSDM---DSER 389
SARLR+VQPEVN+D+ YE LK+ KKT+D + D + ++S S QE + D S
Sbjct: 1044 SARLRNVQPEVNLDRDYEGLKKPKKTTDAVSIDSAADKSQNQDSGQEMPSPDAANPQSAA 1103
Query: 388 PEPVTIDGN------SNGTGTNSFADDSSLNDVTMLDDEFSSQVESVKQHFVKRSENYSL 227
P P D S + DS D E SS+ ESVK F++R++NYS+
Sbjct: 1104 PSPTDGDREDQSEPPSKEASAEDMSGDSCKGPAAKSDKEISSRTESVKGVFMERTDNYSI 1163
Query: 226 PQLERIYTRIMKGVFETKEKGMNDDD--IKTSVVRFLLKFVEDDANF 92
PQ+ER+YTRIMKGV ET +KG+ DDD K S++RFL +F + ANF
Sbjct: 1164 PQMERLYTRIMKGVLETLDKGLRDDDNNPKHSILRFLSEFAQHQANF 1210
>gb|AAL10476.1| At1g05910/T20M3_16 [Arabidopsis thaliana] gi|27363450|gb|AAO11644.1|
At1g05910/T20M3_16 [Arabidopsis thaliana]
Length = 1210
Score = 128 bits (321), Expect = 5e-29
Identities = 74/167 (44%), Positives = 99/167 (58%), Gaps = 11/167 (6%)
Frame = -1
Query: 559 SARLRHVQPEVNMDKSYEALKRTKKTSDFPAEDKSQEESIPSKSSQEHQTSDM---DSER 389
SARLR+VQPEVN+D+ YE LK+ KKT+D + D + ++S S QE + D S
Sbjct: 1044 SARLRNVQPEVNLDRDYEGLKKPKKTTDAVSIDSAADKSQNQDSGQEMPSPDAANPQSAA 1103
Query: 388 PEPVTIDGN------SNGTGTNSFADDSSLNDVTMLDDEFSSQVESVKQHFVKRSENYSL 227
P P D S + DS D E SS+ ESVK F++R++NYS+
Sbjct: 1104 PSPTDGDREDQSEPPSKEASAEDMSGDSCKGPAAKSDKEISSRTESVKGVFMERTDNYSI 1163
Query: 226 PQLERIYTRIMKGVFETKEKGMNDDD--IKTSVVRFLLKFVEDDANF 92
PQ+ER+YTRIMKGV ET +KG+ DDD K S++RFL +F + ANF
Sbjct: 1164 PQMERLYTRIMKGVLETLDKGLRDDDNNPKHSILRFLSEFAQHQANF 1210
>gb|AAN41251.1| bromodomain protein 103 [Zea mays]
Length = 1192
Score = 92.4 bits (228), Expect = 3e-18
Identities = 62/176 (35%), Positives = 91/176 (51%), Gaps = 20/176 (11%)
Frame = -1
Query: 559 SARLRHVQPEVNMDKSYEALKRTKKTSDFPAEDKSQEESIPSKSSQEHQTSDMDSERP-- 386
SARLR+VQPEVN+ +SYE L+R KK++ E+ S + E D+D +P
Sbjct: 1030 SARLRNVQPEVNLSQSYEVLRRQKKSA----------ENEQSMTRDEKSPEDVDLSKPTD 1079
Query: 385 -EPVTIDGNSNGTGTNSFADDSSLND-----------------VTMLDDEFSSQVESVKQ 260
E + SNGT A+DS + D+ Q+E++KQ
Sbjct: 1080 AEEAAKEPESNGTTKE--ANDSPAKEPEVSTSPEPMESDNGKIAAATGDDLLEQLEALKQ 1137
Query: 259 HFVKRSENYSLPQLERIYTRIMKGVFETKEKGMNDDDIKTSVVRFLLKFVEDDANF 92
F++ + +Y +PQLER+Y++IMKG E K N+D + VVR+L FVE+ NF
Sbjct: 1138 RFMELTASYGVPQLERLYSKIMKGAIELTSKESNEDH-RRLVVRYLWTFVENSNNF 1192
>sp|P27625|RPC1_PLAFA DNA-DIRECTED RNA POLYMERASE III LARGEST SUBUNIT
gi|160596|gb|AAA29729.1| RNA polymerase III largest
subunit
Length = 2339
Score = 39.7 bits (91), Expect = 0.025
Identities = 30/124 (24%), Positives = 58/124 (46%)
Frame = -1
Query: 514 SYEALKRTKKTSDFPAEDKSQEESIPSKSSQEHQTSDMDSERPEPVTIDGNSNGTGTNSF 335
S E K + +D ++E S++ + + SE+ + + D N+N N+
Sbjct: 2001 SKEENKNAIRVKKEEIDDNLEKEENIIYVSEKDSVNQLKSEKKKDINDDNNNNDDNNNNN 2060
Query: 334 ADDSSLNDVTMLDDEFSSQVESVKQHFVKRSENYSLPQLERIYTRIMKGVFETKEKGMND 155
DD+ +ND T+ +D+ S ++K++ K EN +ER+ ++ KEK +
Sbjct: 2061 DDDNKIND-TIFNDDIDSDRNNLKENGSK-LENVGEHIIERL-------SYKMKEKNVKK 2111
Query: 154 DDIK 143
+ IK
Sbjct: 2112 EHIK 2115
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 463,395,222
Number of Sequences: 1393205
Number of extensions: 9410187
Number of successful extensions: 34117
Number of sequences better than 10.0: 182
Number of HSP's better than 10.0 without gapping: 32148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33967
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
