Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001020A_C01 KMC001020A_c01
(576 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T05998 hypothetical protein F17M5.230 - Arabidopsis thalian... 42 0.006
ref|NP_567921.1| putative protein; protein id: At4g33470.1, supp... 40 0.028
ref|NP_784022.1| Na(+)/H(+) antiporter [Lactobacillus plantarum ... 36 0.40
pir||C84653 hypothetical protein At2g25830 [imported] - Arabidop... 33 0.53
ref|NP_565610.1| expressed protein; protein id: At2g25830.1, sup... 33 0.53
>pir||T05998 hypothetical protein F17M5.230 - Arabidopsis thaliana
gi|4490314|emb|CAB38805.1| putative protein [Arabidopsis
thaliana] gi|7270295|emb|CAB80064.1| putative protein
[Arabidopsis thaliana]
Length = 359
Score = 42.0 bits (97), Expect = 0.006
Identities = 17/29 (58%), Positives = 24/29 (82%)
Frame = -3
Query: 472 EVMDQAMENGLIFIDGSGPTYITATVATM 386
+ MD+A ++GLIFI+GSGPTY T+TV +
Sbjct: 71 KAMDEASDSGLIFIEGSGPTYATSTVTAL 99
>ref|NP_567921.1| putative protein; protein id: At4g33470.1, supported by cDNA:
gi_15529219 [Arabidopsis thaliana]
gi|15529220|gb|AAK97704.1| AT4g33470/F17M5_230
[Arabidopsis thaliana] gi|21360523|gb|AAM47377.1|
AT4g33470/F17M5_230 [Arabidopsis thaliana]
Length = 423
Score = 39.7 bits (91), Expect = 0.028
Identities = 16/25 (64%), Positives = 22/25 (88%)
Frame = -3
Query: 472 EVMDQAMENGLIFIDGSGPTYITAT 398
+ MD+A ++GLIFI+GSGPTY T+T
Sbjct: 136 KAMDEASDSGLIFIEGSGPTYATST 160
>ref|NP_784022.1| Na(+)/H(+) antiporter [Lactobacillus plantarum WCFS1]
gi|28269961|emb|CAD62860.1| Na(+)/H(+) antiporter
[Lactobacillus plantarum WCFS1]
Length = 466
Score = 35.8 bits (81), Expect = 0.40
Identities = 22/54 (40%), Positives = 30/54 (54%), Gaps = 1/54 (1%)
Frame = +3
Query: 378 AIIIVATVAVMYVGPEPSMKIRPFSIA*SITSIVIFGRSSEPLSD-TNLCPPLA 536
A I++T+ + G +M I P IA +I S IFG + PLSD TNL +A
Sbjct: 130 AFTIISTIGIALFGIGTTMGINPALIAGAIISGAIFGDKTSPLSDSTNLAAAIA 183
>pir||C84653 hypothetical protein At2g25830 [imported] - Arabidopsis thaliana
Length = 339
Score = 33.5 bits (75), Expect(2) = 0.53
Identities = 16/26 (61%), Positives = 19/26 (72%)
Frame = -3
Query: 526 GHRFVSDSGSELLPNITIEVMDQAME 449
G F D+GSELLP T+EV D+AME
Sbjct: 291 GVNFEPDNGSELLPLTTVEVDDEAME 316
Score = 20.8 bits (42), Expect(2) = 0.53
Identities = 8/13 (61%), Positives = 12/13 (91%)
Frame = -1
Query: 555 NTILSKLREEDID 517
+TILSKLR+E ++
Sbjct: 281 STILSKLRDEGVN 293
>ref|NP_565610.1| expressed protein; protein id: At2g25830.1, supported by cDNA:
gi_15810382, supported by cDNA: gi_21281202 [Arabidopsis
thaliana] gi|22096384|sp|O82314|YB30_ARATH Hypothetical
protein At2g25830 gi|20197365|gb|AAC42247.2| expressed
protein [Arabidopsis thaliana]
Length = 331
Score = 33.5 bits (75), Expect(2) = 0.53
Identities = 16/26 (61%), Positives = 19/26 (72%)
Frame = -3
Query: 526 GHRFVSDSGSELLPNITIEVMDQAME 449
G F D+GSELLP T+EV D+AME
Sbjct: 283 GVNFEPDNGSELLPLTTVEVDDEAME 308
Score = 20.8 bits (42), Expect(2) = 0.53
Identities = 8/13 (61%), Positives = 12/13 (91%)
Frame = -1
Query: 555 NTILSKLREEDID 517
+TILSKLR+E ++
Sbjct: 273 STILSKLRDEGVN 285
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 445,168,064
Number of Sequences: 1393205
Number of extensions: 9126604
Number of successful extensions: 23199
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 22638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23188
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
