Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001017A_C01 KMC001017A_c01
(537 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO81656.1| glycerophosphoryl diester phosphodiesterase famil... 36 0.26
gb|AAN71401.1| RE41788p [Drosophila melanogaster] 32 3.7
ref|NP_609140.1| CG13796-PA [Drosophila melanogaster] gi|2458257... 32 3.7
ref|NP_596004.1| hypothetical zinc finger protein [Schizosacchar... 32 6.3
gb|AAH09522.1|AAH09522 Unknown (protein for IMAGE:3354783) [Homo... 31 8.3
>gb|AAO81656.1| glycerophosphoryl diester phosphodiesterase family protein
[Enterococcus faecalis V583]
Length = 600
Score = 36.2 bits (82), Expect = 0.26
Identities = 25/84 (29%), Positives = 45/84 (52%), Gaps = 6/84 (7%)
Frame = -3
Query: 274 LYDSTEQMREIILVTFFLFLALI*ILGYLSGLIYIGVLL--LHAPWFAKYF----KLICD 113
L+ + Q++++ +TF FLA ++ LSGL + LL + P F F ++I
Sbjct: 113 LHGTLLQIKKVRGITFLFFLAYFFLILPLSGLTFRSYLLTRVKIPAFILDFIFANRVIII 172
Query: 112 VGMILVALFSAYQLLYIKFALPDI 41
+G +L+ L Y + + FALP++
Sbjct: 173 IGFVLLELIILYLAIRLAFALPEL 196
>gb|AAN71401.1| RE41788p [Drosophila melanogaster]
Length = 641
Score = 32.3 bits (72), Expect = 3.7
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = -3
Query: 199 LGYLSGLIYIGVLLLHAPWFAKYFKLICDVGMILVALFSAYQLLYIKFALP 47
L + L+ G+L+L W + CD+ +L S++++ +I+FA P
Sbjct: 498 LAVFTHLLISGILVLMTTWVYGRVRFQCDLQFMLGKTISSFKIFFIRFATP 548
>ref|NP_609140.1| CG13796-PA [Drosophila melanogaster] gi|24582579|ref|NP_723308.1|
CG13796-PB [Drosophila melanogaster]
gi|24582581|ref|NP_723309.1| CG13796-PC [Drosophila
melanogaster] gi|22945891|gb|AAG22420.2| CG13796-PA
[Drosophila melanogaster] gi|22945892|gb|AAG22421.2|
CG13796-PB [Drosophila melanogaster]
gi|22945893|gb|AAN10642.1| CG13796-PC [Drosophila
melanogaster]
Length = 561
Score = 32.3 bits (72), Expect = 3.7
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = -3
Query: 199 LGYLSGLIYIGVLLLHAPWFAKYFKLICDVGMILVALFSAYQLLYIKFALP 47
L + L+ G+L+L W + CD+ +L S++++ +I+FA P
Sbjct: 418 LAVFTHLLISGILVLMTTWVYGRVRFQCDLQFMLGKTISSFKIFFIRFATP 468
>ref|NP_596004.1| hypothetical zinc finger protein [Schizosaccharomyces pombe]
gi|7491512|pir||T11681 hypothetical protein
SPBC21D10.09c - fission yeast (Schizosaccharomyces
pombe) gi|3560212|emb|CAA20765.1| hypothetical zinc
finger protein [Schizosaccharomyces pombe]
Length = 1610
Score = 31.6 bits (70), Expect = 6.3
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 18/121 (14%)
Frame = +3
Query: 201 IQIRAKKRKKVTKIISLICSVLSYK---WLLTYISPSFL---------SLCPNSTVEPLF 344
I++ R K+ +S++ S L K WL YI+P + S+ + + L
Sbjct: 102 IEVERHVRLKIFVFMSVLSSALQKKLAPWLKFYITPWVMGFFDSDRAVSVSAKDSFKNLL 161
Query: 345 SS*KNP------ARTLKNDVSELPLYSSIDMSCDLVSFTNKETEGTELKGTSKCRTLVNF 506
S K P T+ V+++ L+ + DL F+N+E E + S C ++F
Sbjct: 162 SEEKWPHVWLKFGSTIAPIVTDVFLHEDKESLTDLRFFSNEEAESKVTRVKSSCLLTLSF 221
Query: 507 L 509
L
Sbjct: 222 L 222
>gb|AAH09522.1|AAH09522 Unknown (protein for IMAGE:3354783) [Homo sapiens]
Length = 346
Score = 31.2 bits (69), Expect = 8.3
Identities = 15/48 (31%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Frame = +3
Query: 210 RAKKRKKVTKIISLICSVLSYKWLLTYI---SPSFLSLCPNSTVEPLF 344
R K KKVT+++S++ +V + WL YI S +++ P ++ +F
Sbjct: 224 RKKSEKKVTRMVSIVVAVFIFCWLPFYIFNVSSVSMAISPTPALKGMF 271
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 462,929,960
Number of Sequences: 1393205
Number of extensions: 9645838
Number of successful extensions: 26487
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 25689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26482
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
