Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001009A_C01 KMC001009A_c01
(535 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T50644 oxoglutarate dehydrogenase (lipoamide) (EC 1.2.4.2) ... 172 3e-42
pir||T05894 probable oxoglutarate dehydrogenase (lipoamide) (EC ... 172 3e-42
ref|NP_201376.1| 2-oxoglutarate dehydrogenase, E1 component; pro... 172 3e-42
ref|NP_191101.1| 2-oxoglutarate dehydrogenase, E1 subunit - like... 170 1e-41
gb|AAO42889.1| At3g55410 [Arabidopsis thaliana] 170 1e-41
>pir||T50644 oxoglutarate dehydrogenase (lipoamide) (EC 1.2.4.2) E1 chain
[imported] - Arabidopsis thaliana
gi|4210330|emb|CAA11552.1| 2-oxoglutarate dehydrogenase,
E1 subunit [Arabidopsis thaliana]
Length = 1027
Score = 172 bits (435), Expect = 3e-42
Identities = 88/128 (68%), Positives = 102/128 (78%), Gaps = 1/128 (0%)
Frame = +2
Query: 155 WFRAGTNLAKHAIRKTLAKGGSSYHVSRARVFPSSPLSGGGSGSRGFQTTVFKSR-EQAA 331
WFR G+++AK AIR+TL++ + +R RV P +R F +T+ KS+ E AA
Sbjct: 3 WFRIGSSVAKLAIRRTLSQSRCGSYATRTRVLPCQ--------TRCFHSTILKSKAESAA 54
Query: 332 PVPRAVPLSRLTDSFLDGTSSVYLEELQRAWEADPNSVDESWDNFFRNFVGQASTSPGLS 511
PVPR VPLS+LTDSFLDGTSSVYLEELQRAWEADPNSVDESWDNFFRNFVGQASTSPG+S
Sbjct: 55 PVPRPVPLSKLTDSFLDGTSSVYLEELQRAWEADPNSVDESWDNFFRNFVGQASTSPGIS 114
Query: 512 GQTIQESM 535
GQTIQESM
Sbjct: 115 GQTIQESM 122
>pir||T05894 probable oxoglutarate dehydrogenase (lipoamide) (EC 1.2.4.2) -
Arabidopsis thaliana gi|2827711|emb|CAA16684.1|
oxoglutarate dehydrogenase - like protein [Arabidopsis
thaliana]
Length = 973
Score = 172 bits (435), Expect = 3e-42
Identities = 88/128 (68%), Positives = 102/128 (78%), Gaps = 1/128 (0%)
Frame = +2
Query: 155 WFRAGTNLAKHAIRKTLAKGGSSYHVSRARVFPSSPLSGGGSGSRGFQTTVFKSR-EQAA 331
WFR G+++AK AIR+TL++ + +R RV P +R F +T+ KS+ E AA
Sbjct: 3 WFRIGSSVAKLAIRRTLSQSRCGSYATRTRVLPCQ--------TRCFHSTILKSKAESAA 54
Query: 332 PVPRAVPLSRLTDSFLDGTSSVYLEELQRAWEADPNSVDESWDNFFRNFVGQASTSPGLS 511
PVPR VPLS+LTDSFLDGTSSVYLEELQRAWEADPNSVDESWDNFFRNFVGQASTSPG+S
Sbjct: 55 PVPRPVPLSKLTDSFLDGTSSVYLEELQRAWEADPNSVDESWDNFFRNFVGQASTSPGIS 114
Query: 512 GQTIQESM 535
GQTIQESM
Sbjct: 115 GQTIQESM 122
>ref|NP_201376.1| 2-oxoglutarate dehydrogenase, E1 component; protein id:
At5g65750.1, supported by cDNA: gi_18389253, supported
by cDNA: gi_20465596 [Arabidopsis thaliana]
gi|10177333|dbj|BAB10682.1| 2-oxoglutarate
dehydrogenase, E1 component [Arabidopsis thaliana]
gi|18389254|gb|AAL67070.1| putative 2-oxoglutarate
dehydrogenase E1 component [Arabidopsis thaliana]
gi|20465597|gb|AAM20281.1| putative 2-oxoglutarate
dehydrogenase E1 component [Arabidopsis thaliana]
Length = 1025
Score = 172 bits (435), Expect = 3e-42
Identities = 88/128 (68%), Positives = 102/128 (78%), Gaps = 1/128 (0%)
Frame = +2
Query: 155 WFRAGTNLAKHAIRKTLAKGGSSYHVSRARVFPSSPLSGGGSGSRGFQTTVFKSR-EQAA 331
WFR G+++AK AIR+TL++ + +R RV P +R F +T+ KS+ E AA
Sbjct: 3 WFRIGSSVAKLAIRRTLSQSRCGSYATRTRVLPCQ--------TRCFHSTILKSKAESAA 54
Query: 332 PVPRAVPLSRLTDSFLDGTSSVYLEELQRAWEADPNSVDESWDNFFRNFVGQASTSPGLS 511
PVPR VPLS+LTDSFLDGTSSVYLEELQRAWEADPNSVDESWDNFFRNFVGQASTSPG+S
Sbjct: 55 PVPRPVPLSKLTDSFLDGTSSVYLEELQRAWEADPNSVDESWDNFFRNFVGQASTSPGIS 114
Query: 512 GQTIQESM 535
GQTIQESM
Sbjct: 115 GQTIQESM 122
>ref|NP_191101.1| 2-oxoglutarate dehydrogenase, E1 subunit - like protein; protein
id: At3g55410.1 [Arabidopsis thaliana]
gi|11252290|pir||T47680 probable oxoglutarate
dehydrogenase (lipoamide) (EC 1.2.4.2) E1 chain -
Arabidopsis thaliana gi|7076784|emb|CAB75899.1|
2-oxoglutarate dehydrogenase, E1 subunit-like protein
[Arabidopsis thaliana]
Length = 1009
Score = 170 bits (430), Expect = 1e-41
Identities = 85/127 (66%), Positives = 102/127 (79%)
Frame = +2
Query: 155 WFRAGTNLAKHAIRKTLAKGGSSYHVSRARVFPSSPLSGGGSGSRGFQTTVFKSREQAAP 334
WFRAG+++ K A+R+ L +G S + +R R PS +R F +T+ + + Q+AP
Sbjct: 3 WFRAGSSVTKLAVRRILNQGAS--YATRTRSIPSQ--------TRSFHSTICRPKAQSAP 52
Query: 335 VPRAVPLSRLTDSFLDGTSSVYLEELQRAWEADPNSVDESWDNFFRNFVGQASTSPGLSG 514
VPRAVPLS+LTDSFLDGTSSVYLEELQRAWEADPNSVDESWDNFFRNFVGQA+TSPG+SG
Sbjct: 53 VPRAVPLSKLTDSFLDGTSSVYLEELQRAWEADPNSVDESWDNFFRNFVGQAATSPGISG 112
Query: 515 QTIQESM 535
QTIQESM
Sbjct: 113 QTIQESM 119
>gb|AAO42889.1| At3g55410 [Arabidopsis thaliana]
Length = 1017
Score = 170 bits (430), Expect = 1e-41
Identities = 85/127 (66%), Positives = 102/127 (79%)
Frame = +2
Query: 155 WFRAGTNLAKHAIRKTLAKGGSSYHVSRARVFPSSPLSGGGSGSRGFQTTVFKSREQAAP 334
WFRAG+++ K A+R+ L +G S + +R R PS +R F +T+ + + Q+AP
Sbjct: 3 WFRAGSSVTKLAVRRILNQGAS--YATRTRSIPSQ--------TRSFHSTICRPKAQSAP 52
Query: 335 VPRAVPLSRLTDSFLDGTSSVYLEELQRAWEADPNSVDESWDNFFRNFVGQASTSPGLSG 514
VPRAVPLS+LTDSFLDGTSSVYLEELQRAWEADPNSVDESWDNFFRNFVGQA+TSPG+SG
Sbjct: 53 VPRAVPLSKLTDSFLDGTSSVYLEELQRAWEADPNSVDESWDNFFRNFVGQAATSPGISG 112
Query: 515 QTIQESM 535
QTIQESM
Sbjct: 113 QTIQESM 119
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 485,046,806
Number of Sequences: 1393205
Number of extensions: 11008622
Number of successful extensions: 36313
Number of sequences better than 10.0: 119
Number of HSP's better than 10.0 without gapping: 33541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36109
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
