Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001006A_C02 KMC001006A_c02
(543 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB86519.1| P0692C11.15 [Oryza sativa (japonica cultivar-gro... 50 1e-05
ref|NP_194673.1| putative protein; protein id: At4g29440.1 [Arab... 49 3e-05
ref|NP_179090.1| hypothetical protein; protein id: At2g14830.1 [... 47 2e-04
pir||T05345 hypothetical protein F8B4.50 - Arabidopsis thaliana ... 41 0.011
ref|NP_194961.2| putative protein; protein id: At4g32350.1, supp... 41 0.011
>dbj|BAB86519.1| P0692C11.15 [Oryza sativa (japonica cultivar-group)]
Length = 1132
Score = 50.4 bits (119), Expect = 1e-05
Identities = 29/75 (38%), Positives = 43/75 (56%), Gaps = 6/75 (8%)
Frame = -3
Query: 457 SSESARLQPSSSVPKTVRKDSEEGEAASKSQNSDG--DTPSK---QKATVHVHPKLP-DY 296
S + R++P K+ D K +N++ +TP + + A HVHPKLP DY
Sbjct: 1058 SPKPVRVEPPLGKGKSQEADLNTVSVTGKEENTESPAETPKESTSKTAPSHVHPKLPTDY 1117
Query: 295 DSFAAHFLSLKKDRQ 251
DSFAAHF+SL+ +R+
Sbjct: 1118 DSFAAHFMSLRTNRR 1132
>ref|NP_194673.1| putative protein; protein id: At4g29440.1 [Arabidopsis thaliana]
gi|25407614|pir||E85343 hypothetical protein AT4g29440
[imported] - Arabidopsis thaliana
gi|7269843|emb|CAB79702.1| putative protein [Arabidopsis
thaliana]
Length = 1071
Score = 49.3 bits (116), Expect = 3e-05
Identities = 31/94 (32%), Positives = 49/94 (51%), Gaps = 9/94 (9%)
Frame = -3
Query: 514 KSSRVSNESRNQNASSTMRSSESA---RLQPSSSVPKTVRKDSEEGEAASKSQ------N 362
K + + + +SS++ +E R PS P+ +EG A+S S +
Sbjct: 979 KEKPAAKQQGSATSSSSLPKTEKISHYRESPSKLTPEAKSMAKQEGLASSSSSLPKTVTS 1038
Query: 361 SDGDTPSKQKATVHVHPKLPDYDSFAAHFLSLKK 260
D +TP+K+KA+ HVHPKLPDYD A +L++
Sbjct: 1039 PDPETPAKEKAS-HVHPKLPDYDDIFAKLGALRR 1071
>ref|NP_179090.1| hypothetical protein; protein id: At2g14830.1 [Arabidopsis
thaliana] gi|7486188|pir||T02593 hypothetical protein
At2g14830 [imported] - Arabidopsis thaliana
gi|3252806|gb|AAC24176.1| hypothetical protein
[Arabidopsis thaliana]
Length = 454
Score = 47.0 bits (110), Expect = 2e-04
Identities = 23/52 (44%), Positives = 30/52 (57%)
Frame = -3
Query: 406 RKDSEEGEAASKSQNSDGDTPSKQKATVHVHPKLPDYDSFAAHFLSLKKDRQ 251
+K+SEEGE + K +HVHPKLPDYD AHF +L+K +Q
Sbjct: 408 QKESEEGERSFKK-------------AMHVHPKLPDYDQIVAHFTALRKQQQ 446
>pir||T05345 hypothetical protein F8B4.50 - Arabidopsis thaliana
gi|2864609|emb|CAA16956.1| putative protein [Arabidopsis
thaliana] gi|4049337|emb|CAA22562.1| putative protein
[Arabidopsis thaliana] gi|7270139|emb|CAB79952.1|
putative protein [Arabidopsis thaliana]
Length = 730
Score = 40.8 bits (94), Expect = 0.011
Identities = 24/87 (27%), Positives = 37/87 (41%), Gaps = 2/87 (2%)
Frame = -3
Query: 517 WKSSRVSNESRNQNASSTMRSSESARL--QPSSSVPKTVRKDSEEGEAASKSQNSDGDTP 344
++ V ES+++ S+ + QP+ S + + E A + P
Sbjct: 642 YEKDNVQEESKSRRTHLKKGESDEEMMIHQPARSRSLPAEQLAGPSEPAKTFARAASFQP 701
Query: 343 SKQKATVHVHPKLPDYDSFAAHFLSLK 263
+ HVHPKLP+YD AA F LK
Sbjct: 702 ERSSEAKHVHPKLPNYDDLAARFAELK 728
>ref|NP_194961.2| putative protein; protein id: At4g32350.1, supported by cDNA:
gi_19347943 [Arabidopsis thaliana]
gi|19347944|gb|AAL86307.1| unknown protein [Arabidopsis
thaliana] gi|21689735|gb|AAM67489.1| unknown protein
[Arabidopsis thaliana]
Length = 732
Score = 40.8 bits (94), Expect = 0.011
Identities = 24/87 (27%), Positives = 37/87 (41%), Gaps = 2/87 (2%)
Frame = -3
Query: 517 WKSSRVSNESRNQNASSTMRSSESARL--QPSSSVPKTVRKDSEEGEAASKSQNSDGDTP 344
++ V ES+++ S+ + QP+ S + + E A + P
Sbjct: 644 YEKDNVQEESKSRRTHLKKGESDEEMMIHQPARSRSLPAEQLAGPSEPAKTFARAASFQP 703
Query: 343 SKQKATVHVHPKLPDYDSFAAHFLSLK 263
+ HVHPKLP+YD AA F LK
Sbjct: 704 ERSSEAKHVHPKLPNYDDLAARFAELK 730
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 427,029,670
Number of Sequences: 1393205
Number of extensions: 8252767
Number of successful extensions: 25734
Number of sequences better than 10.0: 73
Number of HSP's better than 10.0 without gapping: 23894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25520
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
