Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC001000A_C01 KMC001000A_c01
(529 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_188996.1| unknown protein; protein id: At3g23540.1 [Arabi... 54 9e-07
dbj|BAB02772.1| gene_id:MDB19.2~unknown protein [Arabidopsis tha... 54 9e-07
ref|NP_501888.1| Q/N-rich domain Prion like protein PQN-55 (pqn-... 40 0.022
ref|NP_463627.1| lmo0094 [Listeria monocytogenes EGD-e] gi|25516... 39 0.049
dbj|BAA78504.1| serine repeat antigen [Plasmodium falciparum] 39 0.049
>ref|NP_188996.1| unknown protein; protein id: At3g23540.1 [Arabidopsis thaliana]
Length = 568
Score = 54.3 bits (129), Expect = 9e-07
Identities = 42/100 (42%), Positives = 56/100 (56%), Gaps = 4/100 (4%)
Frame = -1
Query: 517 KTESNHVSVNRSQD-LGSETSSDGEVLPPPPPLETSSATESSHASGSARCDSSGSL-QSS 344
+T+S V RSQD L S + S+ PP ETSS+ + S GSL Q
Sbjct: 479 ETDSASSPVTRSQDQLPSSSESN-------PPSETSSSLARTVTSSVP-----GSLSQKE 526
Query: 343 SESDISHSTKATVTVVKNPAS--NVMDGLMRRWDFNFFRN 230
SE+ TKATVTV ++ ++ V+DGL+RRWD NFF+N
Sbjct: 527 SETGDVPGTKATVTVERSSSAPGKVLDGLIRRWDLNFFKN 566
>dbj|BAB02772.1| gene_id:MDB19.2~unknown protein [Arabidopsis thaliana]
Length = 599
Score = 54.3 bits (129), Expect = 9e-07
Identities = 42/100 (42%), Positives = 56/100 (56%), Gaps = 4/100 (4%)
Frame = -1
Query: 517 KTESNHVSVNRSQD-LGSETSSDGEVLPPPPPLETSSATESSHASGSARCDSSGSL-QSS 344
+T+S V RSQD L S + S+ PP ETSS+ + S GSL Q
Sbjct: 510 ETDSASSPVTRSQDQLPSSSESN-------PPSETSSSLARTVTSSVP-----GSLSQKE 557
Query: 343 SESDISHSTKATVTVVKNPAS--NVMDGLMRRWDFNFFRN 230
SE+ TKATVTV ++ ++ V+DGL+RRWD NFF+N
Sbjct: 558 SETGDVPGTKATVTVERSSSAPGKVLDGLIRRWDLNFFKN 597
>ref|NP_501888.1| Q/N-rich domain Prion like protein PQN-55 (pqn-55) [Caenorhabditis
elegans] gi|7506524|pir||T24089 hypothetical protein
R09E10.7 - Caenorhabditis elegans
gi|3879085|emb|CAA94301.1| C. elegans PQN-55 protein
(corresponding sequence R09E10.7) [Caenorhabditis
elegans]
Length = 1791
Score = 39.7 bits (91), Expect = 0.022
Identities = 24/82 (29%), Positives = 37/82 (44%)
Frame = -1
Query: 454 DGEVLPPPPPLETSSATESSHASGSARCDSSGSLQSSSESDISHSTKATVTVVKNPASNV 275
D E++P PP L T S + A S+ D+SG +S S SHST++ P+ +
Sbjct: 1144 DSEMIPRPPALITRSRPSNEDARSSSSSDNSGYTNRNSGSTHSHSTESIDDSQPGPSMST 1203
Query: 274 MDGLMRRWDFNFFRNGNNR*NK 209
D + + R R N+
Sbjct: 1204 TDSSATKKSNSIVRKPRRRTNR 1225
>ref|NP_463627.1| lmo0094 [Listeria monocytogenes EGD-e] gi|25516561|pir||AG1086
hypothetical protein lmo0094 [imported] - Listeria
monocytogenes (strain EGD-e) gi|16409453|emb|CAC98309.1|
lmo0094 [Listeria monocytogenes]
Length = 186
Score = 38.5 bits (88), Expect = 0.049
Identities = 31/83 (37%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Frame = +3
Query: 81 NLNITTFYT---RATYFSISLVQTMAIFFSYKNNV*TTMDIRESHLLFHLLLPFLKKLKS 251
N +T+F+T S+ VQ AI F Y T+ I S LFHLL F KK++
Sbjct: 57 NEEVTSFFTVIGATLLVSLITVQITAIPFQY------TVLIFWSSWLFHLL-SFWKKIRV 109
Query: 252 QRRIKPSMTLLAGFLTTVTVAFV 320
+++K M LAGFL + FV
Sbjct: 110 PKKMKNEMIQLAGFLLITALYFV 132
>dbj|BAA78504.1| serine repeat antigen [Plasmodium falciparum]
Length = 257
Score = 38.5 bits (88), Expect = 0.049
Identities = 24/77 (31%), Positives = 39/77 (50%)
Frame = -1
Query: 511 ESNHVSVNRSQDLGSETSSDGEVLPPPPPLETSSATESSHASGSARCDSSGSLQSSSESD 332
+ +V + + G + SS G V P+ SS++ SS +S S+ SS S SSS S
Sbjct: 155 KKKYVKLPSNGTTGEQGSSTGTVRGDTEPISDSSSSSSSSSSSSSSSSSSSSSSSSSSSS 214
Query: 331 ISHSTKATVTVVKNPAS 281
S S+ ++ + PA+
Sbjct: 215 SSSSSSSSSSSESLPAN 231
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 449,285,184
Number of Sequences: 1393205
Number of extensions: 9407477
Number of successful extensions: 52788
Number of sequences better than 10.0: 249
Number of HSP's better than 10.0 without gapping: 43609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51200
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
