Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000999A_C01 KMC000999A_c01
(543 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_565875.1| expressed protein; protein id: At2g37940.1, sup... 126 2e-28
gb|AAK82549.1| AT3g54020/F5K20_320 [Arabidopsis thaliana] 124 6e-28
ref|NP_190970.1| putative protein; protein id: At3g54020.1, supp... 124 6e-28
dbj|BAB89515.1| P0414E03.11 [Oryza sativa (japonica cultivar-gro... 85 5e-16
ref|NP_671898.1| hypothetical protein; protein id: At2g29525.1 [... 80 1e-14
>ref|NP_565875.1| expressed protein; protein id: At2g37940.1, supported by cDNA:
gi_13272424, supported by cDNA: gi_16604321, supported
by cDNA: gi_19699183 [Arabidopsis thaliana]
gi|25365904|pir||A84799 hypothetical protein At2g37940
[imported] - Arabidopsis thaliana
gi|13272425|gb|AAK17151.1|AF325083_1 unknown protein
[Arabidopsis thaliana] gi|16604322|gb|AAL24167.1|
At2g37940/T8P21.15 [Arabidopsis thaliana]
gi|19699184|gb|AAL90958.1| At2g37940/T8P21.15
[Arabidopsis thaliana]
Length = 305
Score = 126 bits (316), Expect = 2e-28
Identities = 64/92 (69%), Positives = 74/92 (79%), Gaps = 1/92 (1%)
Frame = -3
Query: 541 HYTVDVVVAWYTVNLVVFFVEKKLPELPDRTTAASALLLPLSTKDRDGRTKEENHKLMNG 362
HY+VDVVVAWYTVNLVVF ++KKLPELPDRT A+LLP+ +KD RTKEENHKL+NG
Sbjct: 221 HYSVDVVVAWYTVNLVVFCLDKKLPELPDRT----AVLLPVISKD---RTKEENHKLLNG 273
Query: 361 NSIDPADWRQRTQTNGKILEDG-HADSAMNGA 269
N +DPADWR R Q NGKI +G H D+ MNGA
Sbjct: 274 NGVDPADWRPRAQVNGKIDSNGVHTDNTMNGA 305
>gb|AAK82549.1| AT3g54020/F5K20_320 [Arabidopsis thaliana]
Length = 305
Score = 124 bits (312), Expect = 6e-28
Identities = 63/90 (70%), Positives = 71/90 (78%)
Frame = -3
Query: 541 HYTVDVVVAWYTVNLVVFFVEKKLPELPDRTTAASALLLPLSTKDRDGRTKEENHKLMNG 362
HYTVDVVVAWYTVNLVVFF++KKLPELPDRTTA LLP+ +KD RTKEE+HKL+NG
Sbjct: 222 HYTVDVVVAWYTVNLVVFFLDKKLPELPDRTTA----LLPVISKD---RTKEESHKLLNG 274
Query: 361 NSIDPADWRQRTQTNGKILEDGHADSAMNG 272
N +DPAD R R Q NGK GH D+A NG
Sbjct: 275 NGVDPADRRPRAQVNGKDSNGGHTDNATNG 304
>ref|NP_190970.1| putative protein; protein id: At3g54020.1, supported by cDNA:
gi_15081788 [Arabidopsis thaliana]
gi|11290578|pir||T45942 hypothetical protein F5K20.320 -
Arabidopsis thaliana gi|7630022|emb|CAB88364.1| putative
protein [Arabidopsis thaliana]
gi|22655034|gb|AAM98108.1| At3g54020/F5K20_320
[Arabidopsis thaliana]
Length = 305
Score = 124 bits (312), Expect = 6e-28
Identities = 63/90 (70%), Positives = 71/90 (78%)
Frame = -3
Query: 541 HYTVDVVVAWYTVNLVVFFVEKKLPELPDRTTAASALLLPLSTKDRDGRTKEENHKLMNG 362
HYTVDVVVAWYTVNLVVFF++KKLPELPDRTTA LLP+ +KD RTKEE+HKL+NG
Sbjct: 222 HYTVDVVVAWYTVNLVVFFLDKKLPELPDRTTA----LLPVISKD---RTKEESHKLLNG 274
Query: 361 NSIDPADWRQRTQTNGKILEDGHADSAMNG 272
N +DPAD R R Q NGK GH D+A NG
Sbjct: 275 NGVDPADRRPRAQVNGKDSNGGHTDNATNG 304
>dbj|BAB89515.1| P0414E03.11 [Oryza sativa (japonica cultivar-group)]
gi|20805167|dbj|BAB92836.1| P0529H11.3 [Oryza sativa
(japonica cultivar-group)]
Length = 313
Score = 85.1 bits (209), Expect = 5e-16
Identities = 50/106 (47%), Positives = 62/106 (58%), Gaps = 16/106 (15%)
Frame = -3
Query: 541 HYTVDVVVAWYTVNLVVFFVEKKLPELPDRTTAASALLLPLSTKDRDGRT---------- 392
HY+VDVVVAWYTVNLVVFF++ K LP++ KD+DGRT
Sbjct: 222 HYSVDVVVAWYTVNLVVFFIDNK---------------LPVTAKDKDGRTKEELHKLEKD 266
Query: 391 ---KEENHKLMNGNSIDPADWRQRTQTNGKILEDGH---ADSAMNG 272
KEE HKL+NGN++D D RQR Q NGK ED + +D+ NG
Sbjct: 267 CKMKEEFHKLLNGNTVDSTDRRQRVQMNGKHGEDINHTLSDATPNG 312
>ref|NP_671898.1| hypothetical protein; protein id: At2g29525.1 [Arabidopsis
thaliana]
Length = 262
Score = 80.5 bits (197), Expect = 1e-14
Identities = 36/64 (56%), Positives = 52/64 (81%), Gaps = 1/64 (1%)
Frame = -3
Query: 541 HYTVDVVVAWYTVNLVVFFVEKKLPELPDRTTAASAL-LLPLSTKDRDGRTKEENHKLMN 365
HYTVD+VVAWYTVNLV+F+V+ KLPE+ +R++ S LLPLSTKD ++KE++ +L+N
Sbjct: 195 HYTVDIVVAWYTVNLVMFYVDSKLPEMAERSSGPSPTPLLPLSTKDSKNKSKEDHQRLLN 254
Query: 364 GNSI 353
N++
Sbjct: 255 ENNV 258
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 471,862,231
Number of Sequences: 1393205
Number of extensions: 10026528
Number of successful extensions: 33720
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 32779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33702
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
