Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000987A_C01 KMC000987A_c01
(735 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564097.1| hypothetical protein; protein id: At1g19870.1, ... 89 8e-17
gb|AAM26680.1| At1g19870/F6F9_18 [Arabidopsis thaliana] gi|24111... 89 8e-17
pir||A86332 F6F9.8 protein - Arabidopsis thaliana gi|10086499|gb... 88 1e-16
gb|AAM61480.1| unknown [Arabidopsis thaliana] 86 4e-16
emb|CAB76913.1| hypothetical protein [Cicer arietinum] 46 6e-04
>ref|NP_564097.1| hypothetical protein; protein id: At1g19870.1, supported by cDNA:
gi_20856688 [Arabidopsis thaliana]
Length = 794
Score = 88.6 bits (218), Expect = 8e-17
Identities = 48/82 (58%), Positives = 59/82 (71%), Gaps = 2/82 (2%)
Frame = -2
Query: 731 NSVPRFMLATESAKAKISANYSPRSSPDVHEQD-IHVKKRHSLPGAT-GKQGSPRVQHSP 558
NS+PRFM T+SAKAK+ + SPRSSPD+ E+D + KKRHSLPG T GKQ SPR+Q S
Sbjct: 721 NSLPRFMQPTQSAKAKVQEHNSPRSSPDLQERDVVSAKKRHSLPGVTNGKQVSPRIQRSA 780
Query: 557 AEAQQGTKGNGIHNLHERKWLR 492
++AQQGTK +RKW R
Sbjct: 781 SQAQQGTK--------DRKWQR 794
>gb|AAM26680.1| At1g19870/F6F9_18 [Arabidopsis thaliana] gi|24111423|gb|AAN46862.1|
At1g19870/F6F9_18 [Arabidopsis thaliana]
Length = 794
Score = 88.6 bits (218), Expect = 8e-17
Identities = 48/82 (58%), Positives = 59/82 (71%), Gaps = 2/82 (2%)
Frame = -2
Query: 731 NSVPRFMLATESAKAKISANYSPRSSPDVHEQD-IHVKKRHSLPGAT-GKQGSPRVQHSP 558
NS+PRFM T+SAKAK+ + SPRSSPD+ E+D + KKRHSLPG T GKQ SPR+Q S
Sbjct: 721 NSLPRFMQPTQSAKAKVQEHNSPRSSPDLQERDVVSAKKRHSLPGVTNGKQVSPRIQRSA 780
Query: 557 AEAQQGTKGNGIHNLHERKWLR 492
++AQQGTK +RKW R
Sbjct: 781 SQAQQGTK--------DRKWQR 794
>pir||A86332 F6F9.8 protein - Arabidopsis thaliana
gi|10086499|gb|AAG12559.1|AC007797_19 Unknown Protein
[Arabidopsis thaliana]
Length = 805
Score = 88.2 bits (217), Expect = 1e-16
Identities = 45/69 (65%), Positives = 55/69 (79%), Gaps = 2/69 (2%)
Frame = -2
Query: 731 NSVPRFMLATESAKAKISANYSPRSSPDVHEQD-IHVKKRHSLPGAT-GKQGSPRVQHSP 558
NS+PRFM T+SAKAK+ + SPRSSPD+ E+D + KKRHSLPG T GKQ SPR+Q S
Sbjct: 721 NSLPRFMQPTQSAKAKVQEHNSPRSSPDLQERDVVSAKKRHSLPGVTNGKQVSPRIQRSA 780
Query: 557 AEAQQGTKG 531
++AQQGTKG
Sbjct: 781 SQAQQGTKG 789
>gb|AAM61480.1| unknown [Arabidopsis thaliana]
Length = 312
Score = 86.3 bits (212), Expect = 4e-16
Identities = 47/82 (57%), Positives = 58/82 (70%), Gaps = 2/82 (2%)
Frame = -2
Query: 731 NSVPRFMLATESAKAKISANYSPRSSPDVHEQD-IHVKKRHSLPGATG-KQGSPRVQHSP 558
NS+PRFM T+SAKAK+ + SPRSSPD+ E+D + KKRHSLPG T KQ SPR+Q S
Sbjct: 239 NSLPRFMQPTQSAKAKVQEHNSPRSSPDLQERDVVSAKKRHSLPGVTNWKQVSPRIQRSA 298
Query: 557 AEAQQGTKGNGIHNLHERKWLR 492
++AQQGTK +RKW R
Sbjct: 299 SQAQQGTK--------DRKWQR 312
>emb|CAB76913.1| hypothetical protein [Cicer arietinum]
Length = 314
Score = 45.8 bits (107), Expect = 6e-04
Identities = 26/65 (40%), Positives = 37/65 (56%)
Frame = -2
Query: 728 SVPRFMLATESAKAKISANYSPRSSPDVHEQDIHVKKRHSLPGATGKQGSPRVQHSPAEA 549
++P +M ATESAKAK+ A SPR D E++ + +RHSLP T + + + A
Sbjct: 225 TIPSYMAATESAKAKLRAQGSPRFGQDGSEKNNNA-RRHSLPSLTNSKITSHSPRTQRPA 283
Query: 548 QQGTK 534
Q G K
Sbjct: 284 QSGGK 288
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 616,733,431
Number of Sequences: 1393205
Number of extensions: 13643865
Number of successful extensions: 55950
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 34520
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51435
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34906576228
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
