Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000980A_C01 KMC000980A_c01
(759 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181022.2| unknown protein; protein id: At2g34750.1, suppo... 34 2.6
gb|AAB28982.1| mucin specific immunoglobulin light chain variabl... 33 5.8
gb|AAC52121.1| immunoglobulin kappa light chain variable region 33 5.8
ref|NP_786005.1| unknown [Lactobacillus plantarum WCFS1] gi|2827... 33 5.8
gb|AAB70767.1| mAb3A10 IgG1/k VLJ region [Mus musculus] 32 7.6
>ref|NP_181022.2| unknown protein; protein id: At2g34750.1, supported by cDNA:
gi_20465616 [Arabidopsis thaliana]
gi|20465617|gb|AAM20140.1| unknown protein [Arabidopsis
thaliana] gi|23296957|gb|AAN13210.1| unknown protein
[Arabidopsis thaliana]
Length = 613
Score = 33.9 bits (76), Expect = 2.6
Identities = 23/67 (34%), Positives = 35/67 (51%), Gaps = 9/67 (13%)
Frame = -2
Query: 347 KIFLAADE*VVVSHSRLSLLYKFRQRGVLLPMSFVGLSWLKTSVKYCI--CHQC------ 192
+IFL++++ V S ++ L F RG LP+SFV S LK + C+ C C
Sbjct: 361 EIFLSSNKHVATRMSAVAYLASFLARGKFLPVSFVA-SMLKRLIDECVGYCRTCNDDTRP 419
Query: 191 -SHIVFF 174
+H +FF
Sbjct: 420 EAHQIFF 426
>gb|AAB28982.1| mucin specific immunoglobulin light chain variable region [Mus sp.]
Length = 131
Score = 32.7 bits (73), Expect = 5.8
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = -3
Query: 757 LEWYVKMGGESPKLLLRTLLLSFAGLGLLLC*DPVGVGMRLNLNSEE 617
LEWY++ G+SPKLL+ + + F+G+ G LN++ E
Sbjct: 57 LEWYLQKPGQSPKLLIYKVSIRFSGVPDRFSGSGSGTDFTLNISRVE 103
>gb|AAC52121.1| immunoglobulin kappa light chain variable region
Length = 121
Score = 32.7 bits (73), Expect = 5.8
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = -3
Query: 757 LEWYVKMGGESPKLLLRTLLLSFAGLGLLLC*DPVGVGMRLNLNSEE 617
LEWY++ G+SPKLL+ + + F+G+ G LN++ E
Sbjct: 47 LEWYLQKPGQSPKLLIYKVSIRFSGVPDRFSGSGSGTDFTLNISRVE 93
>ref|NP_786005.1| unknown [Lactobacillus plantarum WCFS1] gi|28271951|emb|CAD64856.1|
unknown [Lactobacillus plantarum WCFS1]
Length = 100
Score = 32.7 bits (73), Expect = 5.8
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -1
Query: 207 YLSPVFSYRFLLFLCFLYLAFYLVSEYGWVINVLKQGIILGFMVTCXWC 61
Y+S +L+LCF++L YL Y +I+GF + WC
Sbjct: 5 YMSLSVVKHTILYLCFIFLLLYLKKRY-------PDNVIIGFFLKIRWC 46
>gb|AAB70767.1| mAb3A10 IgG1/k VLJ region [Mus musculus]
Length = 101
Score = 32.3 bits (72), Expect = 7.6
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = -3
Query: 757 LEWYVKMGGESPKLLLRTLLLSFAGL 680
LEWY++ G+SPKLL+ T+ F+G+
Sbjct: 27 LEWYLQKPGQSPKLLIYTVSNRFSGV 52
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 680,433,893
Number of Sequences: 1393205
Number of extensions: 15417319
Number of successful extensions: 45124
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 43527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45102
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 37158613404
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
