Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000974A_C01 KMC000974A_c01
(522 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC40990.1| ABC1 protein [Nicotiana plumbaginifolia] 212 2e-54
dbj|BAB92011.1| pleiotropic drug resistance like protein [Nicoti... 202 2e-51
emb|CAD59570.1| PDR-like ABC transporter [Oryza sativa (japonica... 202 2e-51
emb|CAA94437.1| PDR5-like ABC transporter [Spirodela polyrhiza] 199 2e-50
emb|CAD59569.1| PDR-like ABC transporter [Oryza sativa (japonica... 198 4e-50
>emb|CAC40990.1| ABC1 protein [Nicotiana plumbaginifolia]
Length = 1436
Score = 212 bits (540), Expect = 2e-54
Identities = 91/134 (67%), Positives = 110/134 (81%)
Frame = -1
Query: 522 FMFFTLCYFTYYGMMTVAVTPNHHVASIVAAAFYAIWNLFSGFVVPRPRIPVWWRWYYWA 343
FMFFT YFT++GMMTVAVTPN +VASIVA FY +WNLFSGF+VPRPRIP+WWRWYYW
Sbjct: 1303 FMFFTFLYFTFFGMMTVAVTPNQNVASIVAGFFYTVWNLFSGFIVPRPRIPIWWRWYYWG 1362
Query: 342 CPVAWTIYGMVASQFGDIEHILESDDVSVKEFIRSYFGMKHDFIGVCAVVVVGFAVGFAF 163
CP+AWT+YG+VASQFGD++ L + +V++F+RS FG KHDF+GV A V+V FAV FAF
Sbjct: 1363 CPIAWTLYGLVASQFGDLQDPLTDQNQTVEQFLRSNFGFKHDFLGVVAAVIVAFAVVFAF 1422
Query: 162 IFAVSFKVFNFPRR 121
FA+ K FNF RR
Sbjct: 1423 TFALGIKAFNFQRR 1436
Score = 38.9 bits (89), Expect = 0.036
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Frame = -1
Query: 450 VASIVAAAFYAIWNLFSGFVVPRPRIPVWWRWYYWACPVAWTIYGMVASQFG--DIEHIL 277
VAS A + GF++ R + WW W YW P+ +++ ++ ++F +HI+
Sbjct: 679 VASTFGAFALLLQFALGGFILARNDVKDWWIWGYWTSPLMYSVNAILVNEFDGQKWKHIV 738
Query: 276 ESDDVSVKEFIRSYFGMKHD----FIGVCAVVVVGFAVGFAFIFAVSFKVFN 133
+ + G D +IGV A + GF V F ++V+ N
Sbjct: 739 AGGTEPLGAAVVRARGFFPDAYWYWIGVGA--LAGFIVMFNIAYSVALAYLN 788
>dbj|BAB92011.1| pleiotropic drug resistance like protein [Nicotiana tabacum]
Length = 1434
Score = 202 bits (514), Expect = 2e-51
Identities = 91/133 (68%), Positives = 109/133 (81%)
Frame = -1
Query: 519 MFFTLCYFTYYGMMTVAVTPNHHVASIVAAAFYAIWNLFSGFVVPRPRIPVWWRWYYWAC 340
MFFTL YFT+YGMM VAVTPN +VASIVAA FY +WNLFSGF++PRPR+PVWWRWYYWA
Sbjct: 1303 MFFTLLYFTFYGMMGVAVTPNQNVASIVAAFFYGVWNLFSGFIIPRPRMPVWWRWYYWAN 1362
Query: 339 PVAWTIYGMVASQFGDIEHILESDDVSVKEFIRSYFGMKHDFIGVCAVVVVGFAVGFAFI 160
PVAWT+YG+VASQFGDI+ L SD+ +V++F+R YFG KHDF+GV A V+ + FAF
Sbjct: 1363 PVAWTLYGLVASQFGDIQTKL-SDNETVEQFLRRYFGFKHDFLGVVAAVLTAYVFMFAFT 1421
Query: 159 FAVSFKVFNFPRR 121
FA + K FNF RR
Sbjct: 1422 FAFAIKAFNFQRR 1434
Score = 43.5 bits (101), Expect = 0.001
Identities = 29/112 (25%), Positives = 55/112 (48%), Gaps = 6/112 (5%)
Frame = -1
Query: 450 VASIVAAAFYAIWNLFSGFVVPRPRIPVWWRWYYWACPVAWTIYGMVASQFGDIE--HIL 277
VAS + + GFV+ R + WW W YW P+ +++ ++ ++F + HI+
Sbjct: 675 VASTFGSFALLLQFALGGFVLSRDDVKSWWIWGYWISPMMYSVNSILVNEFDGKKWNHIV 734
Query: 276 ESDDVSVKEFI---RSYFGMKHDF-IGVCAVVVVGFAVGFAFIFAVSFKVFN 133
+ ++ + R +F + + IGV A +VGF V F F ++++ N
Sbjct: 735 PGGNETLGSTVVKSRGFFPEAYWYWIGVGA--LVGFTVVFNFCYSLALAYLN 784
>emb|CAD59570.1| PDR-like ABC transporter [Oryza sativa (japonica cultivar-group)]
Length = 1444
Score = 202 bits (514), Expect = 2e-51
Identities = 86/134 (64%), Positives = 107/134 (79%)
Frame = -1
Query: 522 FMFFTLCYFTYYGMMTVAVTPNHHVASIVAAAFYAIWNLFSGFVVPRPRIPVWWRWYYWA 343
FMFFT YFT+YGMM VA+TPN +A+IV+ AFY IWN+F+GF++PRPRIP+WWRWY WA
Sbjct: 1311 FMFFTFMYFTFYGMMAVAMTPNSDIAAIVSTAFYCIWNIFAGFLIPRPRIPIWWRWYSWA 1370
Query: 342 CPVAWTIYGMVASQFGDIEHILESDDVSVKEFIRSYFGMKHDFIGVCAVVVVGFAVGFAF 163
CPVAWT+YG+VASQ+GDI + D V+++IR YFG +HD++G A VVGFA FAF
Sbjct: 1371 CPVAWTLYGLVASQYGDITNSTLEDGEVVQDYIRRYFGFRHDYLGYVATAVVGFAALFAF 1430
Query: 162 IFAVSFKVFNFPRR 121
+FA S KVFNF RR
Sbjct: 1431 VFAFSIKVFNFQRR 1444
Score = 35.4 bits (80), Expect = 0.40
Identities = 11/37 (29%), Positives = 20/37 (53%)
Frame = -1
Query: 408 LFSGFVVPRPRIPVWWRWYYWACPVAWTIYGMVASQF 298
+ GF++ R I WW W YW+ P+ + + ++F
Sbjct: 681 VLGGFLISRENIKKWWIWGYWSSPLMYAQNAIAVNEF 717
>emb|CAA94437.1| PDR5-like ABC transporter [Spirodela polyrhiza]
Length = 1441
Score = 199 bits (506), Expect = 2e-50
Identities = 86/134 (64%), Positives = 105/134 (78%)
Frame = -1
Query: 522 FMFFTLCYFTYYGMMTVAVTPNHHVASIVAAAFYAIWNLFSGFVVPRPRIPVWWRWYYWA 343
FMFFT YFTYYGMM VA+TPN +A+IVAAAFYAIWN+F+GF++PRPRIP+WWRWYYWA
Sbjct: 1308 FMFFTFLYFTYYGMMAVAMTPNSDIAAIVAAAFYAIWNIFAGFIIPRPRIPIWWRWYYWA 1367
Query: 342 CPVAWTIYGMVASQFGDIEHILESDDVSVKEFIRSYFGMKHDFIGVCAVVVVGFAVGFAF 163
CPVAWT+YG+V SQFG+ + D +VK+F+R + G +HDF+ V V+VV F V FA
Sbjct: 1368 CPVAWTLYGLVVSQFGEYTDTMSDVDETVKDFLRRFLGFRHDFLPVVGVMVVVFTVLFAS 1427
Query: 162 IFAVSFKVFNFPRR 121
IFA S K NF RR
Sbjct: 1428 IFAFSIKTLNFQRR 1441
Score = 35.8 bits (81), Expect = 0.31
Identities = 27/114 (23%), Positives = 55/114 (47%), Gaps = 6/114 (5%)
Frame = -1
Query: 480 MTVAVTPNHHVASIVAAAFYAIWNLFSGFVVPRPRIPVWWRWYYWACPVAWTIYGMVASQ 301
+ AV + VA A + + GF++ R +I +W W YW+ P+ + + ++
Sbjct: 661 LLAAVGRDMVVADTFGAFAQLVLLVLGGFIIAREKIKKFWIWGYWSSPLMYAQNAIAVNE 720
Query: 300 F--GDIEHILESDDVSVKE-FIRS---YFGMKHDFIGVCAVVVVGFAVGFAFIF 157
F ++++ ++ E F+R+ + +IGV A ++G+ V F F+F
Sbjct: 721 FLGHSWNKLVDATGQTLGERFLRNRGIFVDKNWYWIGVGA--LIGYMVLFNFLF 772
>emb|CAD59569.1| PDR-like ABC transporter [Oryza sativa (japonica cultivar-group)]
gi|28144319|tpg|DAA00887.1| TPA: PDR4 ABC transporter
[Oryza sativa (japonica cultivar-group)]
Length = 1450
Score = 198 bits (503), Expect = 4e-50
Identities = 83/134 (61%), Positives = 108/134 (79%)
Frame = -1
Query: 522 FMFFTLCYFTYYGMMTVAVTPNHHVASIVAAAFYAIWNLFSGFVVPRPRIPVWWRWYYWA 343
FM+FTL YFT+YGMM V +TPN +A+I+++AFY +WNLFSG+++PRP+IPVWWRWY W
Sbjct: 1317 FMYFTLLYFTFYGMMAVGLTPNESIAAIISSAFYNVWNLFSGYLIPRPKIPVWWRWYCWI 1376
Query: 342 CPVAWTIYGMVASQFGDIEHILESDDVSVKEFIRSYFGMKHDFIGVCAVVVVGFAVGFAF 163
CPVAWT+YG+VASQFGDI+H+LE D +V +F+ YFG H+F+ V AVV V FAV FAF
Sbjct: 1377 CPVAWTLYGLVASQFGDIQHVLEGDTRTVAQFVTDYFGFHHNFLWVVAVVHVVFAVTFAF 1436
Query: 162 IFAVSFKVFNFPRR 121
+F+ + FNF RR
Sbjct: 1437 LFSFAIMKFNFQRR 1450
Score = 39.7 bits (91), Expect = 0.021
Identities = 27/115 (23%), Positives = 55/115 (47%), Gaps = 6/115 (5%)
Frame = -1
Query: 459 NHHVASIVAAAFYAIWNLFSGFVVPRPRIPVWWRWYYWACPVAWTIYGMVASQF--GDIE 286
+H + AF A+ GF++ RP + WW W YW P+++ + ++F
Sbjct: 672 SHTFGPLSLLAFAAL----GGFILARPDVKKWWIWGYWISPLSYAQNAISTNEFLGHSWS 727
Query: 285 HILESDDVSVKEFIRSYFGM----KHDFIGVCAVVVVGFAVGFAFIFAVSFKVFN 133
IL ++V++ + G+ K +IG+ A ++G+ + F ++ V+ V +
Sbjct: 728 QILPGENVTLGVSVLKSRGIFTEAKWYWIGLGA--LLGYTLLFNLLYTVALSVLS 780
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 490,752,566
Number of Sequences: 1393205
Number of extensions: 11457321
Number of successful extensions: 40241
Number of sequences better than 10.0: 206
Number of HSP's better than 10.0 without gapping: 37100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40023
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
