Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000973A_C01 KMC000973A_c01
(586 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568314.1| HSP100/ClpB, putative; protein id: At5g15450.1 ... 155 5e-37
gb|AAN17424.1| HSP100/ClpB, putative [Arabidopsis thaliana] gi|2... 155 5e-37
gb|AAF91178.1|AF203700_1 ClpB [Phaseolus lunatus] 96 3e-19
pir||G84644 probable ATP-dependent CLPB protein [imported] - Ara... 91 1e-17
ref|NP_565586.1| HSP100/ClpB, putative; protein id: At2g25140.1,... 91 1e-17
>ref|NP_568314.1| HSP100/ClpB, putative; protein id: At5g15450.1 [Arabidopsis thaliana]
gi|11265210|pir||T51523 clpB heat shock protein-like -
Arabidopsis thaliana gi|9755800|emb|CAC01744.1| clpB heat
shock protein-like [Arabidopsis thaliana]
Length = 968
Score = 155 bits (391), Expect = 5e-37
Identities = 74/90 (82%), Positives = 85/90 (94%)
Frame = -2
Query: 585 QKRIADRKMKIHVTDAAVQVLGSLGYDPNYGARPVKRVIQQNVENELAKGILRGEFKDED 406
QKRIADRKMKI++TDAAV +LGSLGYDPNYGARPVKRVIQQN+ENELAKGILRG+FK+ED
Sbjct: 867 QKRIADRKMKINITDAAVDLLGSLGYDPNYGARPVKRVIQQNIENELAKGILRGDFKEED 926
Query: 405 TILIDTELTAFGKGQLPQQKLVFRKLEAES 316
ILIDTE+TAF GQLPQQKL F+K+E+E+
Sbjct: 927 GILIDTEVTAFSNGQLPQQKLTFKKIESET 956
>gb|AAN17424.1| HSP100/ClpB, putative [Arabidopsis thaliana]
gi|27311927|gb|AAO00929.1| HSP100/ClpB, putative
[Arabidopsis thaliana]
Length = 173
Score = 155 bits (391), Expect = 5e-37
Identities = 74/90 (82%), Positives = 85/90 (94%)
Frame = -2
Query: 585 QKRIADRKMKIHVTDAAVQVLGSLGYDPNYGARPVKRVIQQNVENELAKGILRGEFKDED 406
QKRIADRKMKI++TDAAV +LGSLGYDPNYGARPVKRVIQQN+ENELAKGILRG+FK+ED
Sbjct: 72 QKRIADRKMKINITDAAVDLLGSLGYDPNYGARPVKRVIQQNIENELAKGILRGDFKEED 131
Query: 405 TILIDTELTAFGKGQLPQQKLVFRKLEAES 316
ILIDTE+TAF GQLPQQKL F+K+E+E+
Sbjct: 132 GILIDTEVTAFSNGQLPQQKLTFKKIESET 161
>gb|AAF91178.1|AF203700_1 ClpB [Phaseolus lunatus]
Length = 977
Score = 95.9 bits (237), Expect = 3e-19
Identities = 44/88 (50%), Positives = 68/88 (77%)
Frame = -2
Query: 585 QKRIADRKMKIHVTDAAVQVLGSLGYDPNYGARPVKRVIQQNVENELAKGILRGEFKDED 406
+ R+ +K+ +H T+ AV+ LG LG+DPN+GARPVKRVIQQ VENE+A G+LRG+FK+ED
Sbjct: 881 KNRLKQKKIDLHFTEEAVKHLGVLGFDPNFGARPVKRVIQQLVENEIAMGVLRGDFKEED 940
Query: 405 TILIDTELTAFGKGQLPQQKLVFRKLEA 322
+I++D ++ GK + +L+ +KL++
Sbjct: 941 SIIVDADVAPSGK-ERSLNRLLIKKLDS 967
>pir||G84644 probable ATP-dependent CLPB protein [imported] - Arabidopsis thaliana
Length = 874
Score = 90.9 bits (224), Expect = 1e-17
Identities = 45/87 (51%), Positives = 61/87 (69%)
Frame = -2
Query: 576 IADRKMKIHVTDAAVQVLGSLGYDPNYGARPVKRVIQQNVENELAKGILRGEFKDEDTIL 397
+ +K+K+ T AV +L LG+DPNYGARPVKRVIQQ VENE+A GIL+G+F +EDT+L
Sbjct: 787 LEQKKIKLQYTKEAVDLLAQLGFDPNYGARPVKRVIQQMVENEIAVGILKGDFAEEDTVL 846
Query: 396 IDTELTAFGKGQLPQQKLVFRKLEAES 316
+D + A KLV +KLE+ +
Sbjct: 847 VDVDHLA------SDNKLVIKKLESNA 867
>ref|NP_565586.1| HSP100/ClpB, putative; protein id: At2g25140.1, supported by cDNA:
gi_17979453 [Arabidopsis thaliana]
gi|17979454|gb|AAL50064.1| At2g25140/F13D4.100
[Arabidopsis thaliana] gi|25090122|gb|AAN72234.1|
At2g25140/F13D4.100 [Arabidopsis thaliana]
Length = 964
Score = 90.9 bits (224), Expect = 1e-17
Identities = 45/87 (51%), Positives = 61/87 (69%)
Frame = -2
Query: 576 IADRKMKIHVTDAAVQVLGSLGYDPNYGARPVKRVIQQNVENELAKGILRGEFKDEDTIL 397
+ +K+K+ T AV +L LG+DPNYGARPVKRVIQQ VENE+A GIL+G+F +EDT+L
Sbjct: 877 LEQKKIKLQYTKEAVDLLAQLGFDPNYGARPVKRVIQQMVENEIAVGILKGDFAEEDTVL 936
Query: 396 IDTELTAFGKGQLPQQKLVFRKLEAES 316
+D + A KLV +KLE+ +
Sbjct: 937 VDVDHLA------SDNKLVIKKLESNA 957
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 461,021,008
Number of Sequences: 1393205
Number of extensions: 9361158
Number of successful extensions: 24449
Number of sequences better than 10.0: 388
Number of HSP's better than 10.0 without gapping: 23732
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24440
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
