Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000968A_C01 KMC000968A_c01
(481 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_195344.1| putative protein; protein id: At4g36210.1 [Arab... 35 0.42
ref|NP_179401.1| unknown protein; protein id: At2g18100.1 [Arabi... 32 2.7
gb|AAO42809.1| At2g18100 [Arabidopsis thaliana] 32 2.7
ref|NP_732342.2| CG31122-PA [Drosophila melanogaster] gi|2838135... 31 8.0
>ref|NP_195344.1| putative protein; protein id: At4g36210.1 [Arabidopsis thaliana]
gi|7486029|pir||T04590 hypothetical protein F23E13.100 -
Arabidopsis thaliana gi|2961380|emb|CAA18127.1| putative
protein [Arabidopsis thaliana]
gi|7270574|emb|CAB80292.1| putative protein [Arabidopsis
thaliana]
Length = 516
Score = 35.0 bits (79), Expect = 0.42
Identities = 20/42 (47%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Frame = -3
Query: 269 PSIFLGSQLLTVTD*VEGRFSYI*ATL-ILDPLELDKYYPVY 147
P G + + VTD VEG SY+ T IL+ LE+D YYPV+
Sbjct: 471 PICIPGIENVDVTDMVEGHSSYLWKTQQILERLEIDTYYPVF 512
>ref|NP_179401.1| unknown protein; protein id: At2g18100.1 [Arabidopsis thaliana]
gi|25411832|pir||C84560 hypothetical protein At2g18100
[imported] - Arabidopsis thaliana
gi|4406808|gb|AAD20116.1| unknown protein [Arabidopsis
thaliana]
Length = 655
Score = 32.3 bits (72), Expect = 2.7
Identities = 20/42 (47%), Positives = 25/42 (58%), Gaps = 1/42 (2%)
Frame = -3
Query: 269 PSIFLGSQLLTVTD*VEGRFSYI*ATL-ILDPLELDKYYPVY 147
P G + + VTD VEG SY+ T IL+ LELD YPV+
Sbjct: 610 PVCIPGIEDVDVTDMVEGHSSYLWKTQQILERLELDNSYPVF 651
>gb|AAO42809.1| At2g18100 [Arabidopsis thaliana]
Length = 656
Score = 32.3 bits (72), Expect = 2.7
Identities = 20/42 (47%), Positives = 25/42 (58%), Gaps = 1/42 (2%)
Frame = -3
Query: 269 PSIFLGSQLLTVTD*VEGRFSYI*ATL-ILDPLELDKYYPVY 147
P G + + VTD VEG SY+ T IL+ LELD YPV+
Sbjct: 611 PVCIPGIEDVDVTDMVEGHSSYLWKTQQILERLELDNSYPVF 652
>ref|NP_732342.2| CG31122-PA [Drosophila melanogaster] gi|28381352|gb|AAF55560.3|
CG31122-PA [Drosophila melanogaster]
Length = 642
Score = 30.8 bits (68), Expect = 8.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -3
Query: 437 SSPADLNLPYHSNAAEEPFQQAGLRQYHHHPKVSGEH 327
SS + +N +HS+ ++ QQ ++HHHP S H
Sbjct: 571 SSASLVNSHHHSHMQQQQTQQPPQARHHHHPATSHRH 607
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 408,696,234
Number of Sequences: 1393205
Number of extensions: 8764983
Number of successful extensions: 20885
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 20447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20881
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13397825772
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
