Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000960A_C01 KMC000960A_c01
(566 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190362.2| ABC transporter family protein; protein id: At3... 109 2e-23
pir||T07717 probable ABC-type transport protein T23J7.110 - Arab... 109 2e-23
ref|NP_190358.2| ABC transporter family protein; protein id: At3... 107 8e-23
pir||T07713 probable ABC-type transport protein T23J7.70 - Arabi... 107 8e-23
ref|NP_200978.1| ABC transporter family protein; protein id: At5... 107 1e-22
>ref|NP_190362.2| ABC transporter family protein; protein id: At3g47780.1 [Arabidopsis
thaliana]
Length = 935
Score = 109 bits (273), Expect = 2e-23
Identities = 52/70 (74%), Positives = 60/70 (85%)
Frame = -3
Query: 561 LSPNANEIYHISGTQKFELPKDDVRIGSVFQAVETAKRNFTVSAWGLADTTLEDVFIKVA 382
+SPNA +IYHI+GTQKFELPK++VRI VFQAVE AK NFTV AWGLADTTLEDVFIKV
Sbjct: 866 VSPNAKKIYHIAGTQKFELPKEEVRISEVFQAVEKAKSNFTVFAWGLADTTLEDVFIKVV 925
Query: 381 RGAKAFDILS 352
R +AF++ S
Sbjct: 926 RNGQAFNVFS 935
>pir||T07717 probable ABC-type transport protein T23J7.110 - Arabidopsis thaliana
gi|4741195|emb|CAB41861.1| ABC transporter-like protein
[Arabidopsis thaliana]
Length = 900
Score = 109 bits (273), Expect = 2e-23
Identities = 52/70 (74%), Positives = 60/70 (85%)
Frame = -3
Query: 561 LSPNANEIYHISGTQKFELPKDDVRIGSVFQAVETAKRNFTVSAWGLADTTLEDVFIKVA 382
+SPNA +IYHI+GTQKFELPK++VRI VFQAVE AK NFTV AWGLADTTLEDVFIKV
Sbjct: 831 VSPNAKKIYHIAGTQKFELPKEEVRISEVFQAVEKAKSNFTVFAWGLADTTLEDVFIKVV 890
Query: 381 RGAKAFDILS 352
R +AF++ S
Sbjct: 891 RNGQAFNVFS 900
>ref|NP_190358.2| ABC transporter family protein; protein id: At3g47740.1 [Arabidopsis
thaliana]
Length = 947
Score = 107 bits (268), Expect = 8e-23
Identities = 51/71 (71%), Positives = 60/71 (83%)
Frame = -3
Query: 564 KLSPNANEIYHISGTQKFELPKDDVRIGSVFQAVETAKRNFTVSAWGLADTTLEDVFIKV 385
++SPN +IYHI+GTQKFE+PKD+VRI VFQ VE AK NF V AWGLADTTLEDVFIKV
Sbjct: 877 EVSPNVKKIYHIAGTQKFEIPKDEVRISEVFQVVEKAKSNFKVFAWGLADTTLEDVFIKV 936
Query: 384 ARGAKAFDILS 352
AR A+AF++ S
Sbjct: 937 ARTAQAFNVFS 947
>pir||T07713 probable ABC-type transport protein T23J7.70 - Arabidopsis thaliana
gi|4741191|emb|CAB41857.1| ABC transporter-like protein
[Arabidopsis thaliana]
Length = 925
Score = 107 bits (268), Expect = 8e-23
Identities = 51/71 (71%), Positives = 60/71 (83%)
Frame = -3
Query: 564 KLSPNANEIYHISGTQKFELPKDDVRIGSVFQAVETAKRNFTVSAWGLADTTLEDVFIKV 385
++SPN +IYHI+GTQKFE+PKD+VRI VFQ VE AK NF V AWGLADTTLEDVFIKV
Sbjct: 855 EVSPNVKKIYHIAGTQKFEIPKDEVRISEVFQVVEKAKSNFKVFAWGLADTTLEDVFIKV 914
Query: 384 ARGAKAFDILS 352
AR A+AF++ S
Sbjct: 915 ARTAQAFNVFS 925
>ref|NP_200978.1| ABC transporter family protein; protein id: At5g61700.1 [Arabidopsis
thaliana]
Length = 888
Score = 107 bits (266), Expect = 1e-22
Identities = 53/70 (75%), Positives = 60/70 (85%)
Frame = -3
Query: 561 LSPNANEIYHISGTQKFELPKDDVRIGSVFQAVETAKRNFTVSAWGLADTTLEDVFIKVA 382
+SPNA +IYH++GTQKFELPK +VRI VF+AVE AK NFTV AWGLADTTLEDVFIKVA
Sbjct: 819 VSPNAKKIYHLAGTQKFELPKQEVRIAEVFRAVEKAKANFTVFAWGLADTTLEDVFIKVA 878
Query: 381 RGAKAFDILS 352
R A+AF LS
Sbjct: 879 RTAQAFISLS 888
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 439,495,402
Number of Sequences: 1393205
Number of extensions: 8527213
Number of successful extensions: 17111
Number of sequences better than 10.0: 112
Number of HSP's better than 10.0 without gapping: 16657
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17094
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 20669577624
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
