Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000959A_C01 KMC000959A_c01
(606 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_680188.1| similar to replication factor C large subunit-l... 43 0.003
ref|ZP_00091018.1| hypothetical protein [Azotobacter vinelandii] 36 0.44
gb|AAM78434.1|AF425993_1 putative secreted protein [Streptomyces... 35 0.76
emb|CAD55200.1| putative secreted protein [Streptomyces coelicol... 35 0.76
ref|ZP_00029803.1| hypothetical protein [Burkholderia fungorum] 34 1.3
>ref|NP_680188.1| similar to replication factor C large subunit-like; protein id:
At5g22010.1 [Arabidopsis thaliana]
gi|13374860|emb|CAC34494.1| replication factor C large
subunit-like protein [Arabidopsis thaliana]
Length = 956
Score = 43.1 bits (100), Expect = 0.003
Identities = 23/44 (52%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Frame = -2
Query: 605 LELKGTEKSSSNKTSG-GRGRGRGASASAQKDAPASRAAAKRKR 477
L+LKG S S K +G GRGRG+ A SA+K A + AKRKR
Sbjct: 913 LDLKGAGSSGSRKAAGKGRGRGKAADTSAEKKATGRGSGAKRKR 956
>ref|ZP_00091018.1| hypothetical protein [Azotobacter vinelandii]
Length = 641
Score = 35.8 bits (81), Expect = 0.44
Identities = 29/78 (37%), Positives = 34/78 (43%)
Frame = -2
Query: 536 ASASAQKDAPASRAAAKRKR*LNNMPLSGDPTAKELHMNPGRGKGASASV*KDAPTSRAA 357
A A+ APAS AAA R MPLS P A+E P KGA A AP+ R A
Sbjct: 344 APAAVAPPAPASGAAAGEFRGQEEMPLSATPPARE-PARPAAWKGAGAGY--QAPSPRPA 400
Query: 356 AKRKVIKPYAFFWGSYCE 303
+ Y F+ E
Sbjct: 401 RSAEAGGVYREFFAPLAE 418
>gb|AAM78434.1|AF425993_1 putative secreted protein [Streptomyces coelicolor A3(2)]
Length = 240
Score = 35.0 bits (79), Expect = 0.76
Identities = 31/102 (30%), Positives = 39/102 (37%), Gaps = 1/102 (0%)
Frame = -2
Query: 587 EKSSSNKTSG-GRGRGRGASASAQKDAPASRAAAKRKR*LNNMPLSGDPTAKELHMNPGR 411
E +S KT G G G G AS+S+ AS SG +PG
Sbjct: 63 ENASDEKTDGHGGGYGEDASSSSSSSTSASS--------------SGSHADGATEGSPGV 108
Query: 410 GKGASASV*KDAPTSRAAAKRKVIKPYAFFWGSYCERVAYEP 285
G G +A V D P + VI +G+ CE A EP
Sbjct: 109 GSGNNAQVPVDVPVNLCGNTVDVIAALNPVFGNKCENDAEEP 150
>emb|CAD55200.1| putative secreted protein [Streptomyces coelicolor A3(2)]
Length = 252
Score = 35.0 bits (79), Expect = 0.76
Identities = 31/102 (30%), Positives = 39/102 (37%), Gaps = 1/102 (0%)
Frame = -2
Query: 587 EKSSSNKTSG-GRGRGRGASASAQKDAPASRAAAKRKR*LNNMPLSGDPTAKELHMNPGR 411
E +S KT G G G G AS+S+ AS SG +PG
Sbjct: 70 ENASDEKTDGHGGGYGEDASSSSSSSTSASS--------------SGSHADGATEGSPGV 115
Query: 410 GKGASASV*KDAPTSRAAAKRKVIKPYAFFWGSYCERVAYEP 285
G G +A V D P + VI +G+ CE A EP
Sbjct: 116 GSGNNAQVPVDVPVNLCGNTVDVIAALNPVFGNKCENDAEEP 157
>ref|ZP_00029803.1| hypothetical protein [Burkholderia fungorum]
Length = 206
Score = 34.3 bits (77), Expect = 1.3
Identities = 25/87 (28%), Positives = 37/87 (41%)
Frame = -2
Query: 587 EKSSSNKTSGGRGRGRGASASAQKDAPASRAAAKRKR*LNNMPLSGDPTAKELHMNPGRG 408
+K++ K + + A+A+K APA +AAAK+ P K
Sbjct: 96 KKAAPAKKAAAKKAAPAKKAAAKKAAPAKKAAAKKA-----APAKKAAAKKAAPAKKAAA 150
Query: 407 KGASASV*KDAPTSRAAAKRKVIKPYA 327
K A+A K AP +A AK+ P A
Sbjct: 151 KKAAAPAKKAAPAKKAVAKKAAPAPAA 177
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 525,974,626
Number of Sequences: 1393205
Number of extensions: 11678761
Number of successful extensions: 44075
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 40673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43675
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
