Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000955A_C01 KMC000955A_c01
(525 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191576.1| putative protein; protein id: At3g60170.1 [Arab... 55 5e-12
ref|NP_680163.1| similar to copia-type polyprotein; protein id: ... 50 7e-12
ref|NP_175303.1| copia-type polyprotein, putative; protein id: A... 50 9e-12
ref|NP_176110.1| copia-type polyprotein, putative; protein id: A... 50 9e-12
ref|NP_173613.1| polyprotein, putative; protein id: At1g21945.1 ... 50 9e-12
>ref|NP_191576.1| putative protein; protein id: At3g60170.1 [Arabidopsis thaliana]
gi|11278365|pir||T47841 hypothetical protein T2O9.150 -
Arabidopsis thaliana gi|7076770|emb|CAB75932.1| putative
protein [Arabidopsis thaliana]
Length = 1339
Score = 55.5 bits (132), Expect(2) = 5e-12
Identities = 25/53 (47%), Positives = 38/53 (71%)
Frame = -3
Query: 457 NIETKYHFLRDQVTKGKISLKHCGTDLQVADIMTKGLKTERFRNMRAMLNVVS 299
+IE ++H+LRD V + L++C T+ QVADI TK LK E+F +RA+L +V+
Sbjct: 1282 HIEVRFHYLRDLVNGDVVKLEYCPTEDQVADIFTKPLKLEQFEKLRALLGMVN 1334
Score = 36.2 bits (82), Expect(2) = 5e-12
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = -2
Query: 521 DNKSAIDLAKNPVSHGRSKHIE 456
DN S I L+K+PV HG+SKHIE
Sbjct: 1263 DNSSTIQLSKHPVLHGKSKHIE 1284
>ref|NP_680163.1| similar to copia-type polyprotein; protein id: At5g13205.1
[Arabidopsis thaliana]
Length = 1352
Score = 50.4 bits (119), Expect(2) = 7e-12
Identities = 24/51 (47%), Positives = 36/51 (70%)
Frame = -3
Query: 457 NIETKYHFLRDQVTKGKISLKHCGTDLQVADIMTKGLKTERFRNMRAMLNV 305
+I+T+YH++R+ V+K + L++ T QVADI TK LK E F MR++L V
Sbjct: 1291 HIDTRYHYIRECVSKKDVQLEYVKTHDQVADIFTKPLKGENFIKMRSLLGV 1341
Score = 40.8 bits (94), Expect(2) = 7e-12
Identities = 19/23 (82%), Positives = 20/23 (86%)
Frame = -2
Query: 524 VDNKSAIDLAKNPVSHGRSKHIE 456
VDNKSAI LAKNPV H RSKHI+
Sbjct: 1271 VDNKSAIALAKNPVFHDRSKHID 1293
>ref|NP_175303.1| copia-type polyprotein, putative; protein id: At1g48710.1
[Arabidopsis thaliana]
gi|12597806|gb|AAG60117.1|AC073555_1 copia-type
polyprotein, putative [Arabidopsis thaliana]
Length = 1352
Score = 50.1 bits (118), Expect(2) = 9e-12
Identities = 24/51 (47%), Positives = 36/51 (70%)
Frame = -3
Query: 457 NIETKYHFLRDQVTKGKISLKHCGTDLQVADIMTKGLKTERFRNMRAMLNV 305
+I+T+YH++R+ V+K + L++ T QVADI TK LK E F MR++L V
Sbjct: 1291 HIDTRYHYIRECVSKKDVQLEYVKTHDQVADIFTKPLKREDFIKMRSLLGV 1341
Score = 40.8 bits (94), Expect(2) = 9e-12
Identities = 19/23 (82%), Positives = 20/23 (86%)
Frame = -2
Query: 524 VDNKSAIDLAKNPVSHGRSKHIE 456
VDNKSAI LAKNPV H RSKHI+
Sbjct: 1271 VDNKSAIALAKNPVFHDRSKHID 1293
>ref|NP_176110.1| copia-type polyprotein, putative; protein id: At1g58140.1
[Arabidopsis thaliana] gi|25301687|pir||F96614 probable
copia-type polyprotein T18I24.5 [imported] - Arabidopsis
thaliana gi|12321254|gb|AAG50698.1|AC079604_5 copia-type
polyprotein, putative [Arabidopsis thaliana]
gi|12321387|gb|AAG50765.1|AC079131_10 copia-type
polyprotein, putative [Arabidopsis thaliana]
Length = 1320
Score = 50.1 bits (118), Expect(2) = 9e-12
Identities = 24/51 (47%), Positives = 36/51 (70%)
Frame = -3
Query: 457 NIETKYHFLRDQVTKGKISLKHCGTDLQVADIMTKGLKTERFRNMRAMLNV 305
+I+T+YH++R+ V+K + L++ T QVADI TK LK E F MR++L V
Sbjct: 1259 HIDTRYHYIRECVSKKDVQLEYVKTHDQVADIFTKPLKREDFIKMRSLLGV 1309
Score = 40.8 bits (94), Expect(2) = 9e-12
Identities = 19/23 (82%), Positives = 20/23 (86%)
Frame = -2
Query: 524 VDNKSAIDLAKNPVSHGRSKHIE 456
VDNKSAI LAKNPV H RSKHI+
Sbjct: 1239 VDNKSAIALAKNPVFHDRSKHID 1261
>ref|NP_173613.1| polyprotein, putative; protein id: At1g21945.1 [Arabidopsis thaliana]
Length = 1311
Score = 50.1 bits (118), Expect(2) = 9e-12
Identities = 24/51 (47%), Positives = 36/51 (70%)
Frame = -3
Query: 457 NIETKYHFLRDQVTKGKISLKHCGTDLQVADIMTKGLKTERFRNMRAMLNV 305
+I+T+YH++R+ V+K + L++ T QVADI TK LK E F MR++L V
Sbjct: 1250 HIDTRYHYIRECVSKKDVQLEYVKTHDQVADIFTKPLKREDFIKMRSLLGV 1300
Score = 40.8 bits (94), Expect(2) = 9e-12
Identities = 19/23 (82%), Positives = 20/23 (86%)
Frame = -2
Query: 524 VDNKSAIDLAKNPVSHGRSKHIE 456
VDNKSAI LAKNPV H RSKHI+
Sbjct: 1230 VDNKSAIALAKNPVFHDRSKHID 1252
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 397,768,933
Number of Sequences: 1393205
Number of extensions: 7497088
Number of successful extensions: 17459
Number of sequences better than 10.0: 320
Number of HSP's better than 10.0 without gapping: 16458
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17427
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
