Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000950A_C01 KMC000950A_c01
(600 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566070.1| arabinogalactan-protein (AGP16); protein id: At... 77 2e-13
gb|AAM65765.1| unknown [Arabidopsis thaliana] 76 4e-13
ref|NP_191723.1| arabinogalactan-protein (AGP20); protein id: At... 74 1e-12
dbj|BAB63730.1| P0694A04.12 [Oryza sativa (japonica cultivar-gro... 71 9e-12
gb|AAM12785.1| unknown [Capsicum annuum] 71 9e-12
>ref|NP_566070.1| arabinogalactan-protein (AGP16); protein id: At2g46330.1, supported
by cDNA: gi_10880508, supported by cDNA: gi_15294169,
supported by cDNA: gi_20453294 [Arabidopsis thaliana]
gi|25408982|pir||E84901 hypothetical protein At2g46330
[imported] - Arabidopsis thaliana
gi|4559376|gb|AAD23036.1| expressed protein [Arabidopsis
thaliana] gi|10880509|gb|AAG24284.1|AF195897_1
arabinogalactan protein [Arabidopsis thaliana]
gi|15294170|gb|AAK95262.1|AF410276_1 At2g46330/F11C10.2
[Arabidopsis thaliana] gi|20197373|gb|AAM15047.1|
expressed protein [Arabidopsis thaliana]
gi|20453295|gb|AAM19886.1| At2g46330/F11C10.2
[Arabidopsis thaliana] gi|21553759|gb|AAM62852.1|
unknown [Arabidopsis thaliana]
Length = 73
Score = 77.0 bits (188), Expect = 2e-13
Identities = 40/75 (53%), Positives = 56/75 (74%), Gaps = 1/75 (1%)
Frame = -2
Query: 581 MGPKNSF-GFGIVAMIAALIFALSVPAAVNAQTPAPAPAPTSDGSAVDQGVAYVLMLLAL 405
M +NS GF + + + A+I +L+ AQ+ APAPAPTSDG+++DQG+AY+LM++AL
Sbjct: 1 MASRNSVTGFALFSFVFAVILSLA-----GAQSLAPAPAPTSDGTSIDQGIAYLLMVVAL 55
Query: 404 VLTYLIHSADISSSF 360
VLTYLIH D SSS+
Sbjct: 56 VLTYLIHPLDASSSY 70
>gb|AAM65765.1| unknown [Arabidopsis thaliana]
Length = 63
Score = 75.9 bits (185), Expect = 4e-13
Identities = 37/55 (67%), Positives = 48/55 (87%)
Frame = -2
Query: 548 VAMIAALIFALSVPAAVNAQTPAPAPAPTSDGSAVDQGVAYVLMLLALVLTYLIH 384
V+ I ++IFA+ +P A +AQ+ APAPAPTSDG+ +DQG+AYVLML+ALVLTYLIH
Sbjct: 10 VSTIVSIIFAILLPMA-HAQSAAPAPAPTSDGTTIDQGIAYVLMLVALVLTYLIH 63
>ref|NP_191723.1| arabinogalactan-protein (AGP20); protein id: At3g61640.1
[Arabidopsis thaliana] gi|11357466|pir||T47956
hypothetical protein F15G16.30 - Arabidopsis thaliana
gi|6850855|emb|CAB71094.1| putative protein [Arabidopsis
thaliana] gi|21536871|gb|AAM61203.1| unknown
[Arabidopsis thaliana]
Length = 74
Score = 73.9 bits (180), Expect = 1e-12
Identities = 40/64 (62%), Positives = 52/64 (80%), Gaps = 2/64 (3%)
Frame = -2
Query: 548 VAMIA--ALIFALSVPAAVNAQTPAPAPAPTSDGSAVDQGVAYVLMLLALVLTYLIHSAD 375
VA+IA A +FA+ P A AQ+ APAP+PTSDG+++DQG+AY+LM++ALVLTYLIH D
Sbjct: 7 VAVIALFAFVFAVISPFA-GAQSLAPAPSPTSDGTSIDQGIAYLLMVVALVLTYLIHPLD 65
Query: 374 ISSS 363
SSS
Sbjct: 66 ASSS 69
>dbj|BAB63730.1| P0694A04.12 [Oryza sativa (japonica cultivar-group)]
Length = 69
Score = 71.2 bits (173), Expect = 9e-12
Identities = 40/64 (62%), Positives = 47/64 (72%)
Frame = -2
Query: 551 IVAMIAALIFALSVPAAVNAQTPAPAPAPTSDGSAVDQGVAYVLMLLALVLTYLIHSADI 372
IVAM+A L VNAQ APAPAPTSDG++VDQG+AYVLM +AL LTYLIH D
Sbjct: 14 IVAMLATL---------VNAQ--APAPAPTSDGTSVDQGIAYVLMFVALALTYLIHPLDA 62
Query: 371 SSSF 360
SS++
Sbjct: 63 SSAY 66
>gb|AAM12785.1| unknown [Capsicum annuum]
Length = 67
Score = 71.2 bits (173), Expect = 9e-12
Identities = 39/62 (62%), Positives = 49/62 (78%)
Frame = -2
Query: 551 IVAMIAALIFALSVPAAVNAQTPAPAPAPTSDGSAVDQGVAYVLMLLALVLTYLIHSADI 372
+V+M+ A IF+++ V AQ APAPAPTSDG ++DQG+AYVLML+ALVLTYLIH D
Sbjct: 4 VVSMLLA-IFSMAF-FTVQAQDFAPAPAPTSDGISIDQGIAYVLMLVALVLTYLIHPMDA 61
Query: 371 SS 366
SS
Sbjct: 62 SS 63
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 515,557,146
Number of Sequences: 1393205
Number of extensions: 11263529
Number of successful extensions: 40090
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 34200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39384
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
