Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000949A_C01 KMC000949A_c01
(513 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564242.1| expressed protein; protein id: At1g26270.1, sup... 93 2e-18
ref|NP_565307.1| expressed protein; protein id: At2g03890.1, sup... 83 2e-15
pir||D84453 hypothetical protein At2g03890 [imported] - Arabidop... 83 2e-15
ref|NP_563930.1| ubiquitin, putative; protein id: At1g13640.1, s... 78 7e-14
pir||F86269 F21F23.8 protein - Arabidopsis thaliana gi|8920569|g... 78 7e-14
>ref|NP_564242.1| expressed protein; protein id: At1g26270.1, supported by cDNA:
gi_14334681, supported by cDNA: gi_16648786, supported
by cDNA: gi_18700158 [Arabidopsis thaliana]
gi|25363317|pir||A86389 70.3K hypothetical protein
F28B23.7 - Arabidopsis thaliana
gi|12321173|gb|AAG50675.1|AC079829_8 hypothetical
protein [Arabidopsis thaliana]
gi|14334682|gb|AAK59519.1| unknown protein [Arabidopsis
thaliana] gi|16648787|gb|AAL25584.1| At1g26270/F28B23_7
[Arabidopsis thaliana] gi|18700159|gb|AAL77691.1|
At1g26270/F28B23_7 [Arabidopsis thaliana]
Length = 630
Score = 92.8 bits (229), Expect = 2e-18
Identities = 42/55 (76%), Positives = 50/55 (90%)
Frame = -1
Query: 513 LPASISFVKLADMTEDEWTLFLEKFQELLYPAFAKRKSITLGQRSLQRLGTSCQF 349
+P+S SFVKL+DM+E+EWT+FLEK+QELLYPA KRKSITLGQ+ QRLGTSCQF
Sbjct: 576 IPSSTSFVKLSDMSEEEWTIFLEKYQELLYPAIEKRKSITLGQKQRQRLGTSCQF 630
>ref|NP_565307.1| expressed protein; protein id: At2g03890.1, supported by cDNA:
gi_15810174 [Arabidopsis thaliana]
gi|15810175|gb|AAL06989.1| At2g03890/T18C20.9
[Arabidopsis thaliana] gi|20198186|gb|AAD24822.2|
expressed protein [Arabidopsis thaliana]
gi|27363386|gb|AAO11612.1| At2g03890/T18C20.9
[Arabidopsis thaliana]
Length = 650
Score = 83.2 bits (204), Expect = 2e-15
Identities = 42/55 (76%), Positives = 46/55 (83%)
Frame = -1
Query: 513 LPASISFVKLADMTEDEWTLFLEKFQELLYPAFAKRKSITLGQRSLQRLGTSCQF 349
LP S SFVK+ADM EDEW LFLE+FQELL PAFAKRK+ TL +R QRLGTSCQF
Sbjct: 598 LPVSASFVKVADMKEDEWVLFLERFQELLGPAFAKRKTATLSKR--QRLGTSCQF 650
>pir||D84453 hypothetical protein At2g03890 [imported] - Arabidopsis thaliana
Length = 638
Score = 83.2 bits (204), Expect = 2e-15
Identities = 42/55 (76%), Positives = 46/55 (83%)
Frame = -1
Query: 513 LPASISFVKLADMTEDEWTLFLEKFQELLYPAFAKRKSITLGQRSLQRLGTSCQF 349
LP S SFVK+ADM EDEW LFLE+FQELL PAFAKRK+ TL +R QRLGTSCQF
Sbjct: 586 LPVSASFVKVADMKEDEWVLFLERFQELLGPAFAKRKTATLSKR--QRLGTSCQF 638
>ref|NP_563930.1| ubiquitin, putative; protein id: At1g13640.1, supported by cDNA:
gi_16974595 [Arabidopsis thaliana]
gi|16974596|gb|AAL31202.1| At1g13640/F21F23_7
[Arabidopsis thaliana] gi|23506173|gb|AAN31098.1|
At1g13640/F21F23_7 [Arabidopsis thaliana]
Length = 622
Score = 77.8 bits (190), Expect = 7e-14
Identities = 38/55 (69%), Positives = 47/55 (85%)
Frame = -1
Query: 513 LPASISFVKLADMTEDEWTLFLEKFQELLYPAFAKRKSITLGQRSLQRLGTSCQF 349
LP S++FVKLADM E EW +FLE+FQELLY AFA+RK++TL R+ QRLGTSC+F
Sbjct: 570 LPLSVNFVKLADMKEVEWVVFLERFQELLYSAFAERKTMTL--RNTQRLGTSCKF 622
>pir||F86269 F21F23.8 protein - Arabidopsis thaliana
gi|8920569|gb|AAF81291.1|AC027656_8 Strong similarity to
an unknown protein At2g03890 gi|4582436 from Arabidopsis
thaliana BAC T18C20 gb|AC007196. ESTs gb|AI993825,
gb|T13863, gb|N65091, gb|AI998990, gb|W43493 and
gb|AA585974 come from this gene
Length = 620
Score = 77.8 bits (190), Expect = 7e-14
Identities = 38/55 (69%), Positives = 47/55 (85%)
Frame = -1
Query: 513 LPASISFVKLADMTEDEWTLFLEKFQELLYPAFAKRKSITLGQRSLQRLGTSCQF 349
LP S++FVKLADM E EW +FLE+FQELLY AFA+RK++TL R+ QRLGTSC+F
Sbjct: 568 LPLSVNFVKLADMKEVEWVVFLERFQELLYSAFAERKTMTL--RNTQRLGTSCKF 620
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 403,538,984
Number of Sequences: 1393205
Number of extensions: 7971765
Number of successful extensions: 23134
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 20828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22750
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
