Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000948A_C01 KMC000948A_c01
(715 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176936.1| F12A21.17; protein id: At1g67680.1 [Arabidopsis... 148 8e-35
dbj|BAB92644.1| putative signal recognition particle 72KD protei... 135 6e-31
ref|NP_176933.1| F12A21.20; protein id: At1g67650.1 [Arabidopsis... 125 8e-28
gb|AAO41923.1| unknown protein [Arabidopsis thaliana] 125 8e-28
sp|P49965|SR72_SCHMA SIGNAL RECOGNITION PARTICLE 72 KD PROTEIN (... 74 3e-12
>ref|NP_176936.1| F12A21.17; protein id: At1g67680.1 [Arabidopsis thaliana]
gi|25404963|pir||B96700 protein F12A21.17 [imported] -
Arabidopsis thaliana
gi|11072013|gb|AAG28892.1|AC008113_8 F12A21.17
[Arabidopsis thaliana] gi|28392947|gb|AAO41909.1|
unknown protein [Arabidopsis thaliana]
gi|28827690|gb|AAO50689.1| unknown protein [Arabidopsis
thaliana]
Length = 664
Score = 148 bits (373), Expect = 8e-35
Identities = 80/130 (61%), Positives = 94/130 (71%), Gaps = 1/130 (0%)
Frame = -1
Query: 715 TSGVKQVAGPVDVTETYEEGKNKTKAKKKRKRKPKYPKGFDPANPGPPPDPERWLPKRER 536
T G K + G + +E K KAK+KRKRKPKYPKGFDPANPGPPPDPERWLP+RER
Sbjct: 547 TYGAKPIEGAA--ASSSQEEVKKEKAKRKRKRKPKYPKGFDPANPGPPPDPERWLPRRER 604
Query: 535 STFRPKRKDKRAAQVRGSQGAVAKEKHDAGSSSNHSNPKSNQSTSSKGVAQNAVSEQAKP 356
S+++PKRKDKRAAQ+RGSQGAV K+K +A S++ KSNQ SSKG A P
Sbjct: 605 SSYKPKRKDKRAAQIRGSQGAVTKDKQEAAPSTS----KSNQVASSKGNA-------PAP 653
Query: 355 SSK-SRKKSR 329
SSK S+KKSR
Sbjct: 654 SSKASKKKSR 663
>dbj|BAB92644.1| putative signal recognition particle 72KD protein [Oryza sativa
(japonica cultivar-group)]
Length = 683
Score = 135 bits (340), Expect = 6e-31
Identities = 74/127 (58%), Positives = 91/127 (71%)
Frame = -1
Query: 715 TSGVKQVAGPVDVTETYEEGKNKTKAKKKRKRKPKYPKGFDPANPGPPPDPERWLPKRER 536
TSG + P + + + K KAKK RKRKP+YPKGFDPANPGPPPDPERWLPKRER
Sbjct: 562 TSGARPFEAPKPMEQDVTDEVKKQKAKK-RKRKPRYPKGFDPANPGPPPDPERWLPKRER 620
Query: 535 STFRPKRKDKRAAQVRGSQGAVAKEKHDAGSSSNHSNPKSNQSTSSKGVAQNAVSEQAKP 356
S++RPKRKDKR AQVRG+QGAV+++ + S+S S+ K+NQ+T A A E K
Sbjct: 621 SSYRPKRKDKR-AQVRGAQGAVSRDGTSSASAS--SSSKANQATK----APAAAPEPPKG 673
Query: 355 SSKSRKK 335
S+KSRKK
Sbjct: 674 SNKSRKK 680
>ref|NP_176933.1| F12A21.20; protein id: At1g67650.1 [Arabidopsis thaliana]
gi|11072014|gb|AAG28893.1|AC008113_9 F12A21.20
[Arabidopsis thaliana]
Length = 651
Score = 125 bits (313), Expect = 8e-28
Identities = 71/129 (55%), Positives = 85/129 (65%)
Frame = -1
Query: 715 TSGVKQVAGPVDVTETYEEGKNKTKAKKKRKRKPKYPKGFDPANPGPPPDPERWLPKRER 536
TSG K + G + + EE K K K KRKRKPKYPKGFD N GP PDPERWLP+RER
Sbjct: 534 TSGAKPIEGISAASLSQEEVK---KEKVKRKRKPKYPKGFDLENSGPTPDPERWLPRRER 590
Query: 535 STFRPKRKDKRAAQVRGSQGAVAKEKHDAGSSSNHSNPKSNQSTSSKGVAQNAVSEQAKP 356
S++RPKRKDKRAAQ+RGSQGA+ K K + S++ KS Q+ SK A S +A
Sbjct: 591 SSYRPKRKDKRAAQIRGSQGALTKVKQEEAPSTS----KSKQAAISKANAAGPSSSKA-- 644
Query: 355 SSKSRKKSR 329
S+KKSR
Sbjct: 645 ---SKKKSR 650
>gb|AAO41923.1| unknown protein [Arabidopsis thaliana]
Length = 536
Score = 125 bits (313), Expect = 8e-28
Identities = 71/129 (55%), Positives = 85/129 (65%)
Frame = -1
Query: 715 TSGVKQVAGPVDVTETYEEGKNKTKAKKKRKRKPKYPKGFDPANPGPPPDPERWLPKRER 536
TSG K + G + + EE K K K KRKRKPKYPKGFD N GP PDPERWLP+RER
Sbjct: 419 TSGAKPIEGISAASLSQEEVK---KEKVKRKRKPKYPKGFDLENSGPTPDPERWLPRRER 475
Query: 535 STFRPKRKDKRAAQVRGSQGAVAKEKHDAGSSSNHSNPKSNQSTSSKGVAQNAVSEQAKP 356
S++RPKRKDKRAAQ+RGSQGA+ K K + S++ KS Q+ SK A S +A
Sbjct: 476 SSYRPKRKDKRAAQIRGSQGALTKVKQEEAPSTS----KSKQAAISKANAAGPSSSKA-- 529
Query: 355 SSKSRKKSR 329
S+KKSR
Sbjct: 530 ---SKKKSR 535
>sp|P49965|SR72_SCHMA SIGNAL RECOGNITION PARTICLE 72 KD PROTEIN (SRP72)
gi|508584|gb|AAA69689.1| signal recognition particle 72
kDa subunit
Length = 707
Score = 73.6 bits (179), Expect = 3e-12
Identities = 51/150 (34%), Positives = 71/150 (47%), Gaps = 24/150 (16%)
Frame = -1
Query: 706 VKQVAGPVDVTETYEEGKNKTKAKKK----------------------RKRKPKYPKGFD 593
+K++ P + T+T ++GK+K KK +KRK + PK +
Sbjct: 564 LKRLGKPSEPTDTSDKGKSKRSQIKKSISDIPSSEDPGAQPVISRPKRKKRKVRLPKNYQ 623
Query: 592 PANPGPPPDPERWLPKRERSTFRPKRKDKRAAQVRGSQGAVAKEKH-DAG-SSSNHSNPK 419
P G PDP RWLP+RER+ +R KR+DKR A RG QG + E DA S P+
Sbjct: 624 P---GVMPDPNRWLPRRERTHYRGKRRDKRFAPTRGPQGQITGESEWDAAIRSPKVKIPE 680
Query: 418 SNQSTSSKGVAQNAVSEQAKPSSKSRKKSR 329
+ S+ N +Q K K RKK R
Sbjct: 681 DGSAGSTPKQMSNTAKQQQK---KGRKKGR 707
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 611,371,964
Number of Sequences: 1393205
Number of extensions: 14088605
Number of successful extensions: 63303
Number of sequences better than 10.0: 494
Number of HSP's better than 10.0 without gapping: 51576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 60684
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32936043699
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
