Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000943A_C01 KMC000943A_c01
(586 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_504587.2| Predicted CDS, immunoglobulin domain containing... 32 7.7
gb|AAN61519.1| 1MDa_1 protein [Caenorhabditis elegans] 32 7.7
gb|AAN61517.1| 2MDa_1 protein [Caenorhabditis elegans] 32 7.7
gb|AAN61518.1| 2MDa_2 protein [Caenorhabditis elegans] 32 7.7
>ref|NP_504587.2| Predicted CDS, immunoglobulin domain containing protein family
member [Caenorhabditis elegans]
gi|21328390|gb|AAM48552.1|AC006695_7 Hypothetical
protein W06H8.3 [Caenorhabditis elegans]
Length = 588
Score = 31.6 bits (70), Expect = 7.7
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = -3
Query: 419 ALRVPCSSNFPLSIIISPPILQFL*ASCSSIPSFFVVKEKR 297
ALR+ SS+ PL I I+Q SC SI FV K KR
Sbjct: 251 ALRLSTSSSSPLKFIDLETIIQKPSTSCESIDRMFVEKSKR 291
>gb|AAN61519.1| 1MDa_1 protein [Caenorhabditis elegans]
Length = 10578
Score = 31.6 bits (70), Expect = 7.7
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = -3
Query: 419 ALRVPCSSNFPLSIIISPPILQFL*ASCSSIPSFFVVKEKR 297
ALR+ SS+ PL I I+Q SC SI FV K KR
Sbjct: 1433 ALRLSTSSSSPLKFIDLETIIQKPSTSCESIDRMFVEKSKR 1473
>gb|AAN61517.1| 2MDa_1 protein [Caenorhabditis elegans]
Length = 18534
Score = 31.6 bits (70), Expect = 7.7
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = -3
Query: 419 ALRVPCSSNFPLSIIISPPILQFL*ASCSSIPSFFVVKEKR 297
ALR+ SS+ PL I I+Q SC SI FV K KR
Sbjct: 1433 ALRLSTSSSSPLKFIDLETIIQKPSTSCESIDRMFVEKSKR 1473
>gb|AAN61518.1| 2MDa_2 protein [Caenorhabditis elegans]
Length = 18519
Score = 31.6 bits (70), Expect = 7.7
Identities = 19/41 (46%), Positives = 22/41 (53%)
Frame = -3
Query: 419 ALRVPCSSNFPLSIIISPPILQFL*ASCSSIPSFFVVKEKR 297
ALR+ SS+ PL I I+Q SC SI FV K KR
Sbjct: 1433 ALRLSTSSSSPLKFIDLETIIQKPSTSCESIDRMFVEKSKR 1473
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 521,315,759
Number of Sequences: 1393205
Number of extensions: 11222013
Number of successful extensions: 22933
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 21534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22876
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
