Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000940A_C01 KMC000940A_c01
(508 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_702809.1| ribosomal protein l15, putative [Plasmodium fal... 36 0.29
pir||C71443 ribosomal protein L15.DL4730C, cytosolic - Arabidops... 35 0.38
ref|NP_193470.1| 60S ribosomal protein L15 homolog; protein id: ... 35 0.38
ref|NP_193405.1| ribosomal protein; protein id: At4g16720.1, sup... 35 0.38
sp|O82528|RL15_PETHY 60S RIBOSOMAL PROTEIN L15 gi|3608479|gb|AAD... 33 1.9
>ref|NP_702809.1| ribosomal protein l15, putative [Plasmodium falciparum 3D7]
gi|23498225|emb|CAD49196.1| ribosomal protein l15,
putative [Plasmodium falciparum 3D7]
Length = 220
Score = 35.8 bits (81), Expect = 0.29
Identities = 20/33 (60%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Frame = -1
Query: 262 N*VCNPVHKHRELL-L*TVGSTNRG--AKGHLS 173
N +CNPVHKHREL L + G RG KGHLS
Sbjct: 165 NWICNPVHKHRELRGLTSAGKKYRGLRVKGHLS 197
>pir||C71443 ribosomal protein L15.DL4730C, cytosolic - Arabidopsis thaliana
gi|2245098|emb|CAB10520.1| ribosomal protein
[Arabidopsis thaliana] gi|7268491|emb|CAB78742.1|
ribosomal protein [Arabidopsis thaliana]
Length = 216
Score = 35.4 bits (80), Expect = 0.38
Identities = 17/28 (60%), Positives = 20/28 (70%), Gaps = 1/28 (3%)
Frame = -1
Query: 262 N*VCNPVHKHRELL-L*TVGSTNRGAKG 182
N +CNPVHKHREL L + G NRG +G
Sbjct: 161 NWICNPVHKHRELRGLTSEGKKNRGLRG 188
>ref|NP_193470.1| 60S ribosomal protein L15 homolog; protein id: At4g17390.1,
supported by cDNA: 31538., supported by cDNA:
gi_18175857 [Arabidopsis thaliana]
gi|18175858|gb|AAL59940.1| putative 60S ribosomal
protein L15-like protein [Arabidopsis thaliana]
gi|21592700|gb|AAM64649.1| 60S ribosomal protein L15
homolog [Arabidopsis thaliana]
gi|21689875|gb|AAM67498.1| putative 60S ribosomal
protein L15-like protein [Arabidopsis thaliana]
Length = 204
Score = 35.4 bits (80), Expect = 0.38
Identities = 17/28 (60%), Positives = 20/28 (70%), Gaps = 1/28 (3%)
Frame = -1
Query: 262 N*VCNPVHKHRELL-L*TVGSTNRGAKG 182
N +CNPVHKHREL L + G NRG +G
Sbjct: 149 NWICNPVHKHRELRGLTSEGKKNRGLRG 176
>ref|NP_193405.1| ribosomal protein; protein id: At4g16720.1, supported by cDNA:
23771., supported by cDNA: gi_13878178, supported by
cDNA: gi_16604445, supported by cDNA: gi_19715590
[Arabidopsis thaliana] gi|3122673|sp|O23515|RL15_ARATH
60S ribosomal protein L15 gi|7441105|pir||E71434
ribosomal protein L15.DL4385C, cytosolic - Arabidopsis
thaliana gi|2245027|emb|CAB10447.1| ribosomal protein
[Arabidopsis thaliana] gi|7268422|emb|CAB78714.1|
ribosomal protein [Arabidopsis thaliana]
gi|13878179|gb|AAK44167.1|AF370352_1 putative ribosomal
protein [Arabidopsis thaliana]
gi|16604446|gb|AAL24229.1| AT4g16720/dl4385c
[Arabidopsis thaliana] gi|19715591|gb|AAL91619.1|
AT4g16720/dl4385c [Arabidopsis thaliana]
gi|21592436|gb|AAM64387.1| ribosomal protein
[Arabidopsis thaliana] gi|22136774|gb|AAM91731.1|
putative ribosomal protein [Arabidopsis thaliana]
gi|23505795|gb|AAN28757.1| At4g16720/dl4385c
[Arabidopsis thaliana]
Length = 204
Score = 35.4 bits (80), Expect = 0.38
Identities = 17/28 (60%), Positives = 20/28 (70%), Gaps = 1/28 (3%)
Frame = -1
Query: 262 N*VCNPVHKHRELL-L*TVGSTNRGAKG 182
N +CNPVHKHREL L + G NRG +G
Sbjct: 149 NWICNPVHKHRELRGLTSEGKKNRGLRG 176
>sp|O82528|RL15_PETHY 60S RIBOSOMAL PROTEIN L15 gi|3608479|gb|AAD13389.1| ribosomal
protein L15 [Petunia x hybrida]
Length = 204
Score = 33.1 bits (74), Expect = 1.9
Identities = 16/28 (57%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -1
Query: 262 N*VCNPVHKHRELL-L*TVGSTNRGAKG 182
N +CNPVHKHREL L + G RG +G
Sbjct: 149 NWICNPVHKHRELRGLTSAGKKYRGLRG 176
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 405,532,785
Number of Sequences: 1393205
Number of extensions: 8036437
Number of successful extensions: 14272
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14269
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
