Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000930A_C01 KMC000930A_c01
(741 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568365.1| chromatin remodelling complex ATPase chain ISWI... 181 1e-44
gb|AAK53826.1|AC011806_3 Putative SWI/SNF related, matrix associ... 177 2e-43
gb|AAM13851.1| putative ATPase (ISW2) [Arabidopsis thaliana] 164 1e-39
ref|NP_187291.2| putative ATPase (ISW2-like); protein id: At3g06... 164 1e-39
gb|AAF08585.1|AC011623_18 putative ATPase (ISW2-like) [Arabidops... 164 1e-39
>ref|NP_568365.1| chromatin remodelling complex ATPase chain ISWI -like protein;
protein id: At5g18620.1, supported by cDNA: gi_14334971
[Arabidopsis thaliana] gi|14334972|gb|AAK59663.1|
putative chromatin remodelling complex ATPase chain ISWI
[Arabidopsis thaliana]
Length = 538
Score = 181 bits (459), Expect = 1e-44
Identities = 95/116 (81%), Positives = 104/116 (88%), Gaps = 3/116 (2%)
Frame = -2
Query: 740 RFMICMVHKLGYGNWDELKSAFRMSPLFKFDWFVKSRTTQELTRRCDTLIRLIEKENQEY 561
RFMICMVHKLGYGNWDELK+AFR SPLF+FDWFVKSRTTQEL RRCDTLIRLIEKENQE+
Sbjct: 427 RFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLIEKENQEF 486
Query: 560 DERERQARKEKKLAAKNSTPSKRAVPRQA-ESPS--LKKRKQLTMDDYLSSGKKKK 402
DERERQARKEKKL +K++TPSKR RQA ESPS LKKRKQL+MDDY GK++K
Sbjct: 487 DERERQARKEKKL-SKSATPSKRPSGRQANESPSSLLKKRKQLSMDDY---GKRRK 538
>gb|AAK53826.1|AC011806_3 Putative SWI/SNF related, matrix associated, actin dependent
regulator of chromatin [Oryza sativa]
gi|15528650|dbj|BAB64717.1| putative DNA-dependent ATPase
[Oryza sativa (japonica cultivar-group)]
gi|15528681|dbj|BAB64747.1| putative DNA-dependent ATPase
[Oryza sativa (japonica cultivar-group)]
Length = 1122
Score = 177 bits (448), Expect = 2e-43
Identities = 85/118 (72%), Positives = 102/118 (86%), Gaps = 5/118 (4%)
Frame = -2
Query: 740 RFMICMVHKLGYGNWDELKSAFRMSPLFKFDWFVKSRTTQELTRRCDTLIRLIEKENQEY 561
RFM+CMVHKLGYGNWDELK+AFRMSPLF+FDWFVKSRTTQEL RRCDTLIRL+EKENQEY
Sbjct: 1005 RFMLCMVHKLGYGNWDELKAAFRMSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEY 1064
Query: 560 DERERQARKEKKLAAKNSTPSKRAVPRQAE-----SPSLKKRKQLTMDDYLSSGKKKK 402
DE+ERQARK+K++ AKN TP+KR+ R +E S S K+R+Q MDDY+ SG++K+
Sbjct: 1065 DEQERQARKDKRM-AKNMTPTKRSALRVSEGETTPSNSFKRRRQSLMDDYVGSGRRKR 1121
>gb|AAM13851.1| putative ATPase (ISW2) [Arabidopsis thaliana]
Length = 1055
Score = 164 bits (415), Expect = 1e-39
Identities = 84/104 (80%), Positives = 94/104 (89%), Gaps = 2/104 (1%)
Frame = -2
Query: 740 RFMICMVHKLGYGNWDELKSAFRMSPLFKFDWFVKSRTTQELTRRCDTLIRLIEKENQEY 561
RFMICM+HKLGYGNWDELK+AFR S +F+FDWFVKSRT+QEL RRCDTLIRLIEKENQE+
Sbjct: 952 RFMICMIHKLGYGNWDELKAAFRTSSVFRFDWFVKSRTSQELARRCDTLIRLIEKENQEF 1011
Query: 560 DERERQARKEKKLAAKNSTPSKRAVPRQA-ESP-SLKKRKQLTM 435
DERERQARKEKKL AK++TPSKR + RQA ESP S KKRK L+M
Sbjct: 1012 DERERQARKEKKL-AKSATPSKRPLGRQASESPSSTKKRKHLSM 1054
>ref|NP_187291.2| putative ATPase (ISW2-like); protein id: At3g06400.1, supported by
cDNA: gi_20259461 [Arabidopsis thaliana]
Length = 1055
Score = 164 bits (415), Expect = 1e-39
Identities = 84/104 (80%), Positives = 94/104 (89%), Gaps = 2/104 (1%)
Frame = -2
Query: 740 RFMICMVHKLGYGNWDELKSAFRMSPLFKFDWFVKSRTTQELTRRCDTLIRLIEKENQEY 561
RFMICM+HKLGYGNWDELK+AFR S +F+FDWFVKSRT+QEL RRCDTLIRLIEKENQE+
Sbjct: 952 RFMICMIHKLGYGNWDELKAAFRTSSVFRFDWFVKSRTSQELARRCDTLIRLIEKENQEF 1011
Query: 560 DERERQARKEKKLAAKNSTPSKRAVPRQA-ESP-SLKKRKQLTM 435
DERERQARKEKKL AK++TPSKR + RQA ESP S KKRK L+M
Sbjct: 1012 DERERQARKEKKL-AKSATPSKRPLGRQASESPSSTKKRKHLSM 1054
>gb|AAF08585.1|AC011623_18 putative ATPase (ISW2-like) [Arabidopsis thaliana]
Length = 1057
Score = 164 bits (415), Expect = 1e-39
Identities = 84/104 (80%), Positives = 94/104 (89%), Gaps = 2/104 (1%)
Frame = -2
Query: 740 RFMICMVHKLGYGNWDELKSAFRMSPLFKFDWFVKSRTTQELTRRCDTLIRLIEKENQEY 561
RFMICM+HKLGYGNWDELK+AFR S +F+FDWFVKSRT+QEL RRCDTLIRLIEKENQE+
Sbjct: 954 RFMICMIHKLGYGNWDELKAAFRTSSVFRFDWFVKSRTSQELARRCDTLIRLIEKENQEF 1013
Query: 560 DERERQARKEKKLAAKNSTPSKRAVPRQA-ESP-SLKKRKQLTM 435
DERERQARKEKKL AK++TPSKR + RQA ESP S KKRK L+M
Sbjct: 1014 DERERQARKEKKL-AKSATPSKRPLGRQASESPSSTKKRKHLSM 1056
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 614,618,061
Number of Sequences: 1393205
Number of extensions: 12802052
Number of successful extensions: 42225
Number of sequences better than 10.0: 101
Number of HSP's better than 10.0 without gapping: 37249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41085
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 35469585522
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
