Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000922A_C01 KMC000922A_c01
(519 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196648.1| chorismate mutase CM2; protein id: At5g10870.1,... 115 3e-25
gb|AAD48923.1|L47356_1 chorimate mutase [Lycopersicon esculentum] 111 4e-24
ref|NP_177096.1| chorismate mutase, putative; protein id: At1g69... 87 1e-16
gb|AAD21624.1| chorismate mutase 3 [Arabidopsis thaliana] 87 1e-16
emb|CAB54518.1| chorismate mutase [Arabidopsis thaliana] 84 1e-15
>ref|NP_196648.1| chorismate mutase CM2; protein id: At5g10870.1, supported by cDNA:
gi_17529007, supported by cDNA: gi_5732015 [Arabidopsis
thaliana] gi|11282559|pir||T50796 chorismate mutase CM2
- Arabidopsis thaliana gi|5732016|gb|AAD48922.1|L47355_1
chorimate mutase [Arabidopsis thaliana]
gi|5824345|emb|CAB54519.1| chorismate mutase
[Arabidopsis thaliana] gi|8979721|emb|CAB96842.1|
chorismate mutase CM2 [Arabidopsis thaliana]
gi|17529008|gb|AAL38714.1| putative chorismate mutase
CM2 [Arabidopsis thaliana] gi|22136860|gb|AAM91774.1|
putative chorismate mutase CM2 [Arabidopsis thaliana]
Length = 265
Score = 115 bits (288), Expect = 3e-25
Identities = 61/89 (68%), Positives = 69/89 (76%), Gaps = 2/89 (2%)
Frame = -3
Query: 517 QDYEPLIRAKDTEGLMKLLTFESVQEMVIKRVEKKAMVFGQEVGLNS--DDEKEVKRKFD 344
QDYEP IRA+D E LMKLLTFE V+EMV KRV+KKA FGQEV NS DE + K K D
Sbjct: 177 QDYEPAIRAQDREALMKLLTFEKVEEMVKKRVQKKAETFGQEVKFNSGYGDESKKKYKVD 236
Query: 343 PSVASSLYQKWIIPLTKEVEVEYLLRRLD 257
P +AS +Y +W+IPLTK VEVEYLLRRLD
Sbjct: 237 PLLASRIYGEWLIPLTKLVEVEYLLRRLD 265
>gb|AAD48923.1|L47356_1 chorimate mutase [Lycopersicon esculentum]
Length = 255
Score = 111 bits (278), Expect = 4e-24
Identities = 57/86 (66%), Positives = 69/86 (79%)
Frame = -3
Query: 514 DYEPLIRAKDTEGLMKLLTFESVQEMVIKRVEKKAMVFGQEVGLNSDDEKEVKRKFDPSV 335
+Y+P I A+D + LMKLLTFE+V+EMV KRV KKA VFGQEV LN D+ +EVK K DP +
Sbjct: 171 EYKPFILAQDRDALMKLLTFEAVEEMVKKRVAKKAKVFGQEVSLN-DNAEEVKGKIDPLL 229
Query: 334 ASSLYQKWIIPLTKEVEVEYLLRRLD 257
S LY +W++PLTK VEVEYLLRRLD
Sbjct: 230 VSRLYDEWVMPLTKLVEVEYLLRRLD 255
>ref|NP_177096.1| chorismate mutase, putative; protein id: At1g69370.1, supported by
cDNA: gi_4512121 [Arabidopsis thaliana]
gi|12325088|gb|AAG52497.1|AC018364_15 putative
chorismate mutase; 16810-15349 [Arabidopsis thaliana]
gi|12597791|gb|AAG60103.1|AC073178_14 chorismate mutase,
putative [Arabidopsis thaliana]
gi|26450785|dbj|BAC42501.1| putative chorismate mutase
[Arabidopsis thaliana] gi|28950893|gb|AAO63370.1|
At1g69370 [Arabidopsis thaliana]
Length = 316
Score = 87.0 bits (214), Expect = 1e-16
Identities = 44/86 (51%), Positives = 63/86 (73%), Gaps = 1/86 (1%)
Frame = -3
Query: 511 YEPLIRAKDTEGLMKLLTFESVQEMVIKRVEKKAMVFGQEVGLNS-DDEKEVKRKFDPSV 335
YE I+ +D LM+LLT+E+V+E+V KRVE KA +FGQ++ +N + E + K PS+
Sbjct: 231 YETAIKEQDRTQLMQLLTYETVEEVVKKRVEIKARIFGQDITINDPETEADPSYKIQPSL 290
Query: 334 ASSLYQKWIIPLTKEVEVEYLLRRLD 257
+ LY + I+PLTKEV++EYLLRRLD
Sbjct: 291 VAKLYGERIMPLTKEVQIEYLLRRLD 316
>gb|AAD21624.1| chorismate mutase 3 [Arabidopsis thaliana]
Length = 316
Score = 87.0 bits (214), Expect = 1e-16
Identities = 44/86 (51%), Positives = 63/86 (73%), Gaps = 1/86 (1%)
Frame = -3
Query: 511 YEPLIRAKDTEGLMKLLTFESVQEMVIKRVEKKAMVFGQEVGLNS-DDEKEVKRKFDPSV 335
YE I+ +D LM+LLT+E+V+E+V KRVE KA +FGQ++ +N + E + K PS+
Sbjct: 231 YETAIKEQDRTQLMQLLTYETVEEVVKKRVEIKARIFGQDITINDPETEADPSYKIQPSL 290
Query: 334 ASSLYQKWIIPLTKEVEVEYLLRRLD 257
+ LY + I+PLTKEV++EYLLRRLD
Sbjct: 291 VAKLYGERIMPLTKEVQIEYLLRRLD 316
>emb|CAB54518.1| chorismate mutase [Arabidopsis thaliana]
Length = 334
Score = 83.6 bits (205), Expect = 1e-15
Identities = 42/93 (45%), Positives = 60/93 (64%), Gaps = 8/93 (8%)
Frame = -3
Query: 511 YEPLIRAKDTEGLMKLLTFESVQEMVIKRVEKKAMVFGQEVGLNSDDEKEVKR------- 353
YE I+A+D + LM +LTF +V++ + KRVE K +GQEV + ++++E +
Sbjct: 242 YESAIKAQDKDALMDMLTFPTVEDAIKKRVEMKTRTYGQEVKVGMEEKEEEEEEGNESHV 301
Query: 352 -KFDPSVASSLYQKWIIPLTKEVEVEYLLRRLD 257
K P + LY WI+PLTKEV+VEYLLRRLD
Sbjct: 302 YKISPILVGDLYGDWIMPLTKEVQVEYLLRRLD 334
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 407,987,768
Number of Sequences: 1393205
Number of extensions: 8227783
Number of successful extensions: 18698
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 18420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18680
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16442828304
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
