Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000916A_C02 KMC000916A_c02
(659 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H71447 trehalose-6-phosphate synthase homolog DL4920W - Ara... 103 2e-21
ref|NP_567538.1| trehalose-6-phosphate synthase like protein; pr... 103 2e-21
pir||C96703 hypothetical protein T23K23.13 [imported] - Arabidop... 103 3e-21
gb|AAN52740.1| Putative trehalose-6-phosphate synthase [Oryza sa... 93 3e-18
gb|AAL91978.1|AF483209_1 putative trehalose synthase [Solanum tu... 91 1e-17
>pir||H71447 trehalose-6-phosphate synthase homolog DL4920W - Arabidopsis
thaliana gi|2245136|emb|CAB10557.1|
trehalose-6-phosphate synthase like protein [Arabidopsis
thaliana] gi|7268530|emb|CAB78780.1|
trehalose-6-phosphate synthase like protein [Arabidopsis
thaliana]
Length = 865
Score = 103 bits (258), Expect = 2e-21
Identities = 49/70 (70%), Positives = 61/70 (87%), Gaps = 2/70 (2%)
Frame = -3
Query: 657 QKGVIPDFVLCIGDDKSDEDMFGVIMNAR--ASLSPVADVFPCTVGQKPSKAKYYLEDTS 484
+KG + DF+LC+GDD+SDEDMF VIM+A+ +LSPVA++F CTVGQKPSKAKYYL+DT+
Sbjct: 774 EKGKLLDFILCVGDDRSDEDMFEVIMSAKDGPALSPVAEIFACTVGQKPSKAKYYLDDTA 833
Query: 483 EIFRMLHGLA 454
EI RML GLA
Sbjct: 834 EIIRMLDGLA 843
>ref|NP_567538.1| trehalose-6-phosphate synthase like protein; protein id:
At4g17770.1, supported by cDNA: 95947. [Arabidopsis
thaliana] gi|26452424|dbj|BAC43297.1| putative
trehalose-6-phosphate synthase [Arabidopsis thaliana]
gi|29029046|gb|AAO64902.1| At4g17770 [Arabidopsis
thaliana]
Length = 862
Score = 103 bits (258), Expect = 2e-21
Identities = 49/70 (70%), Positives = 61/70 (87%), Gaps = 2/70 (2%)
Frame = -3
Query: 657 QKGVIPDFVLCIGDDKSDEDMFGVIMNAR--ASLSPVADVFPCTVGQKPSKAKYYLEDTS 484
+KG + DF+LC+GDD+SDEDMF VIM+A+ +LSPVA++F CTVGQKPSKAKYYL+DT+
Sbjct: 771 EKGKLLDFILCVGDDRSDEDMFEVIMSAKDGPALSPVAEIFACTVGQKPSKAKYYLDDTA 830
Query: 483 EIFRMLHGLA 454
EI RML GLA
Sbjct: 831 EIIRMLDGLA 840
>pir||C96703 hypothetical protein T23K23.13 [imported] - Arabidopsis thaliana
gi|12324075|gb|AAG52003.1|AC012563_13 putative
trehalose-6-phosphate synthase; 46897-44149 [Arabidopsis
thaliana]
Length = 847
Score = 103 bits (256), Expect = 3e-21
Identities = 46/75 (61%), Positives = 64/75 (85%), Gaps = 2/75 (2%)
Frame = -3
Query: 657 QKGVIPDFVLCIGDDKSDEDMFGVIMNARA--SLSPVADVFPCTVGQKPSKAKYYLEDTS 484
++G +P+FVLCIGDD+SDEDMF VI ++ S++P A++F CTVGQKPSKAKYYL+DT+
Sbjct: 769 ERGTLPEFVLCIGDDRSDEDMFEVICSSTEGPSIAPRAEIFACTVGQKPSKAKYYLDDTT 828
Query: 483 EIFRMLHGLANASEQ 439
EI R++HGLA+ ++Q
Sbjct: 829 EIVRLMHGLASVTDQ 843
>gb|AAN52740.1| Putative trehalose-6-phosphate synthase [Oryza sativa (japonica
cultivar-group)]
Length = 860
Score = 93.2 bits (230), Expect = 3e-18
Identities = 43/77 (55%), Positives = 61/77 (78%), Gaps = 2/77 (2%)
Frame = -3
Query: 657 QKGVIPDFVLCIGDDKSDEDMFGVIMNARA--SLSPVADVFPCTVGQKPSKAKYYLEDTS 484
++G+ DFVLCIGDD+SDE+MF +I ++ SL+ A+VF CTVG+KPSKAKYYL+DT+
Sbjct: 773 ERGMCTDFVLCIGDDRSDEEMFQMITSSTCGESLAATAEVFACTVGRKPSKAKYYLDDTA 832
Query: 483 EIFRMLHGLANASEQAA 433
E+ R++ GLA+ S + A
Sbjct: 833 EVVRLMQGLASVSNELA 849
>gb|AAL91978.1|AF483209_1 putative trehalose synthase [Solanum tuberosum]
Length = 857
Score = 91.3 bits (225), Expect = 1e-17
Identities = 47/73 (64%), Positives = 57/73 (77%), Gaps = 2/73 (2%)
Frame = -3
Query: 654 KGVIPDFVLCIGDDKSDEDMFGVIMNA--RASLSPVADVFPCTVGQKPSKAKYYLEDTSE 481
KG + DFVLCIGDD+SDEDMF +I +A R +S A VF CTVGQKPSKAKYYL+DTSE
Sbjct: 772 KGKLADFVLCIGDDRSDEDMFEIIGDALSRNIISYDAKVFACTVGQKPSKAKYYLDDTSE 831
Query: 480 IFRMLHGLANASE 442
+ ML LA+A++
Sbjct: 832 VVLMLDSLADATD 844
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 552,401,356
Number of Sequences: 1393205
Number of extensions: 11421423
Number of successful extensions: 25893
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 25191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25865
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28289785200
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
