Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000911A_C01 KMC000911A_c01
(654 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175819.1| hypothetical protein; protein id: At1g54170.1 [... 79 4e-14
pir||H96582 F15I1.27 [imported] - Arabidopsis thaliana gi|458756... 59 6e-08
ref|NP_566471.1| expressed protein; protein id: At3g14010.1, sup... 52 7e-06
dbj|BAB02332.1| gene_id:MDC16.14~unknown protein [Arabidopsis th... 50 2e-05
ref|XP_224724.1| similar to hypothetical protein [Homo sapiens] ... 40 0.036
>ref|NP_175819.1| hypothetical protein; protein id: At1g54170.1 [Arabidopsis
thaliana] gi|22531120|gb|AAM97064.1| unknown protein
[Arabidopsis thaliana] gi|23197992|gb|AAN15523.1|
unknown protein [Arabidopsis thaliana]
Length = 587
Score = 79.3 bits (194), Expect = 4e-14
Identities = 47/107 (43%), Positives = 61/107 (56%), Gaps = 8/107 (7%)
Frame = -3
Query: 652 SFIPTQTPVRPRSPAS---DGSFYFPAGVSTVPSMPVMPMGIGVGTTFAGQQ-PIIYNPQ 485
SF P+ + RP+SP S DGSFY+P VP MP + + G G F GQQ P++YN
Sbjct: 483 SFKPSPSATRPQSPQSPVFDGSFYYPP----VPPMPGLHIRYGTGAAFPGQQHPMMYNNT 538
Query: 484 VAQMPSQPYFHPNGQQYGQ--LVGHPRQVFYMP--NYQPETQYKGRN 356
P+Q Y+ PN QY Q +V R + +MP YQPE YKGR+
Sbjct: 539 TQLSPNQTYYSPNSPQYPQPMMVTQQRPILFMPPTPYQPEMPYKGRD 585
>pir||H96582 F15I1.27 [imported] - Arabidopsis thaliana
gi|4587560|gb|AAD25791.1|AC006577_27 F15I1.27
[Arabidopsis thaliana]
Length = 665
Score = 58.9 bits (141), Expect = 6e-08
Identities = 33/76 (43%), Positives = 43/76 (56%), Gaps = 4/76 (5%)
Frame = -3
Query: 652 SFIPTQTPVRPRSPAS---DGSFYFPAGVSTVPSMPVMPMGIGVGTTFAGQQ-PIIYNPQ 485
SF P+ + RP+SP S DGSFY+P VP MP + + G G F GQQ P++YN
Sbjct: 514 SFKPSPSATRPQSPQSPVFDGSFYYP----PVPPMPGLHIRYGTGAAFPGQQHPMMYNNT 569
Query: 484 VAQMPSQPYFHPNGQQ 437
P+Q Y+ PN Q
Sbjct: 570 TQLSPNQTYYSPNSPQ 585
>ref|NP_566471.1| expressed protein; protein id: At3g14010.1, supported by cDNA:
gi_15028198, supported by cDNA: gi_19310730 [Arabidopsis
thaliana] gi|15028199|gb|AAK76596.1| unknown protein
[Arabidopsis thaliana] gi|19310731|gb|AAL85096.1|
unknown protein [Arabidopsis thaliana]
Length = 595
Score = 52.0 bits (123), Expect = 7e-06
Identities = 45/121 (37%), Positives = 59/121 (48%), Gaps = 23/121 (19%)
Frame = -3
Query: 652 SFIPTQTPVRP-RSPASDGSFYFPAGVSTVP--SMPVM-PMGIGVGTTFAGQQPIIYNPQ 485
SF P Q+ P +SP +D SFY+P G S VP MP M P+ G+ Q ++Y+PQ
Sbjct: 482 SFKPLQSAAAPPQSPIADASFYYP-GPSHVPVQQMPGMPPVNYGLPPYPGNQPQMMYHPQ 540
Query: 484 VAQMPSQPYFHPN------------GQQYGQLV---GHPRQVFYM--PNYQPETQY--KG 362
Y+HPN GQQ Q++ HPR V+YM P Y + Y KG
Sbjct: 541 A-------YYHPNGQPQYPQQQMIPGQQQQQMIPGQQHPRPVYYMHPPPYPQDMPYHNKG 593
Query: 361 R 359
R
Sbjct: 594 R 594
>dbj|BAB02332.1| gene_id:MDC16.14~unknown protein [Arabidopsis thaliana]
Length = 596
Score = 50.4 bits (119), Expect = 2e-05
Identities = 42/116 (36%), Positives = 57/116 (48%), Gaps = 20/116 (17%)
Frame = -3
Query: 652 SFIPTQTPVRP-RSPASDGSFYFPAGVSTVP--SMPVM-PMGIGVGTTFAGQQPIIYNPQ 485
SF P Q+ P +SP +D SFY+P G S VP MP M P+ G+ Q ++Y+PQ
Sbjct: 476 SFKPLQSAAAPPQSPIADASFYYP-GPSHVPVQQMPGMPPVNYGLPPYPGNQPQMMYHPQ 534
Query: 484 VAQMPSQPYFHPN------------GQQYGQLV---GHPRQVFYM-PNYQPETQYK 365
Y+HPN GQQ Q++ HPR V+YM P P+ Y+
Sbjct: 535 A-------YYHPNGQPQYPQQQMIPGQQQQQMIPGQQHPRPVYYMHPPPYPQEVYE 583
>ref|XP_224724.1| similar to hypothetical protein [Homo sapiens] [Rattus norvegicus]
Length = 3236
Score = 39.7 bits (91), Expect = 0.036
Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 2/89 (2%)
Frame = -3
Query: 646 IPTQTPVRPRSPASDGSFYFPAGVSTVPSMPVMPMGI--GVGTTFAGQQPIIYNPQVAQM 473
+P P++P S AS S P+G STV MP++ +G+ G T+ G++ + + +
Sbjct: 2699 LPFSYPLKPVSRASSDSHREPSGASTVGVMPIIHVGVVRGQKTSSGGRRVSLVHEPSSDD 2758
Query: 472 PSQPYFHPNGQQYGQLVGHPRQVFYMPNY 386
P +P + + Q G PR V + +
Sbjct: 2759 PQRPLLDESAKDARQ-AGQPRTVLSLTTH 2786
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 587,219,883
Number of Sequences: 1393205
Number of extensions: 13484080
Number of successful extensions: 47190
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 45362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47115
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 28144814643
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
