Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000910A_C01 KMC000910A_c01
(728 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC66224.1| OJ1058_B11.17 [Oryza sativa (japonica cultivar-g... 277 1e-73
gb|AAO72648.1| possible protein kinase CK2 regulatory subunit [O... 277 1e-73
emb|CAD32500.1| protein kinase Ck2 regulatory subunit 2 [Nicotia... 277 1e-73
ref|NP_193499.1| casein kinase II beta chain CKB2; protein id: A... 273 2e-72
ref|NP_199519.1| casein kinase II beta chain; protein id: At5g47... 271 7e-72
>dbj|BAC66224.1| OJ1058_B11.17 [Oryza sativa (japonica cultivar-group)]
Length = 288
Score = 277 bits (708), Expect = 1e-73
Identities = 128/139 (92%), Positives = 133/139 (95%)
Frame = -1
Query: 728 ESSHGDMFTEEXNELIESAAEMLYGLIHARYILTSQGMAAMLDKYKNYDFGRCPRVYCSG 549
ESSHGDMFTEE NEL+ESAAEMLYGLIHARYILTS+G+AAML+KYKNYDFGRCPRVYC G
Sbjct: 150 ESSHGDMFTEEQNELVESAAEMLYGLIHARYILTSKGLAAMLEKYKNYDFGRCPRVYCCG 209
Query: 548 QPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGQLKP 369
QPCLPVGQSDI RSSTVKIYCP+CEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTY LKP
Sbjct: 210 QPCLPVGQSDIHRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYEHLKP 269
Query: 368 QKPSQSYVPRVFGFKLHKP 312
QKPSQ YVPRVFGFKLHKP
Sbjct: 270 QKPSQRYVPRVFGFKLHKP 288
>gb|AAO72648.1| possible protein kinase CK2 regulatory subunit [Oryza sativa
(japonica cultivar-group)]
Length = 244
Score = 277 bits (708), Expect = 1e-73
Identities = 128/139 (92%), Positives = 133/139 (95%)
Frame = -1
Query: 728 ESSHGDMFTEEXNELIESAAEMLYGLIHARYILTSQGMAAMLDKYKNYDFGRCPRVYCSG 549
ESSHGDMFTEE NEL+ESAAEMLYGLIHARYILTS+G+AAML+KYKNYDFGRCPRVYC G
Sbjct: 106 ESSHGDMFTEEQNELVESAAEMLYGLIHARYILTSKGLAAMLEKYKNYDFGRCPRVYCCG 165
Query: 548 QPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGQLKP 369
QPCLPVGQSDI RSSTVKIYCP+CEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTY LKP
Sbjct: 166 QPCLPVGQSDIHRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYEHLKP 225
Query: 368 QKPSQSYVPRVFGFKLHKP 312
QKPSQ YVPRVFGFKLHKP
Sbjct: 226 QKPSQRYVPRVFGFKLHKP 244
>emb|CAD32500.1| protein kinase Ck2 regulatory subunit 2 [Nicotiana tabacum]
Length = 280
Score = 277 bits (708), Expect = 1e-73
Identities = 127/138 (92%), Positives = 133/138 (96%)
Frame = -1
Query: 728 ESSHGDMFTEEXNELIESAAEMLYGLIHARYILTSQGMAAMLDKYKNYDFGRCPRVYCSG 549
ESSHGDMFTEE NEL+ESAAEMLYGLIH RYILTS+GMAAML+KYKNYDFGRCPRVYC G
Sbjct: 142 ESSHGDMFTEEQNELVESAAEMLYGLIHVRYILTSKGMAAMLEKYKNYDFGRCPRVYCCG 201
Query: 548 QPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGQLKP 369
QPCLPVGQSDIPRSSTVKIYCP+CEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYG LKP
Sbjct: 202 QPCLPVGQSDIPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKP 261
Query: 368 QKPSQSYVPRVFGFKLHK 315
QK +Q+YVPRVFGFKLHK
Sbjct: 262 QKSTQNYVPRVFGFKLHK 279
>ref|NP_193499.1| casein kinase II beta chain CKB2; protein id: At4g17640.1,
supported by cDNA: 19505., supported by cDNA: gi_467974
[Arabidopsis thaliana] gi|729882|sp|P40229|KC2C_ARATH
Casein kinase II beta' chain (CK II)
gi|1076300|pir||S47968 casein kinase II (EC 2.7.1.-)
beta chain CKB2 - Arabidopsis thaliana
gi|467975|gb|AAA53234.1| casein kinase II beta subunit
CKB2 gi|2245122|emb|CAB10544.1| casein kinase II beta
chain CKB2 [Arabidopsis thaliana]
gi|7268516|emb|CAB78767.1| casein kinase II beta chain
CKB2 [Arabidopsis thaliana] gi|21554030|gb|AAM63111.1|
casein kinase II beta chain CKB2 [Arabidopsis thaliana]
gi|26453134|dbj|BAC43643.1| putative casein kinase II
beta chain CKB2 [Arabidopsis thaliana]
gi|28950839|gb|AAO63343.1| At4g17640 [Arabidopsis
thaliana]
Length = 282
Score = 273 bits (698), Expect = 2e-72
Identities = 124/139 (89%), Positives = 133/139 (95%)
Frame = -1
Query: 728 ESSHGDMFTEEXNELIESAAEMLYGLIHARYILTSQGMAAMLDKYKNYDFGRCPRVYCSG 549
ESSHG+MFTEE NELIESAAEMLYG+IHAR+ILTS+G+A+MLDKYKNYDFGRCPRVYC G
Sbjct: 144 ESSHGEMFTEEQNELIESAAEMLYGMIHARFILTSKGLASMLDKYKNYDFGRCPRVYCCG 203
Query: 548 QPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGQLKP 369
QPCLPVGQSDIPR+STVKIYCP+CED+YYPRSKYQGNIDGAYFGTTFPHLFLMTYG LKP
Sbjct: 204 QPCLPVGQSDIPRASTVKIYCPKCEDVYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKP 263
Query: 368 QKPSQSYVPRVFGFKLHKP 312
QK SQSY RVFGFKLHKP
Sbjct: 264 QKASQSYTQRVFGFKLHKP 282
>ref|NP_199519.1| casein kinase II beta chain; protein id: At5g47080.1, supported by
cDNA: gi_468263 [Arabidopsis thaliana]
gi|729880|sp|P40228|KC2B_ARATH Casein kinase II beta
chain (CK II) gi|1076299|pir||S47967 casein kinase II
(EC 2.7.1.-) beta chain CKB1 - Arabidopsis thaliana
gi|468264|gb|AAA53233.1| casein kinase II beta subunit
CKB1 gi|8978075|dbj|BAA98103.1| casein kinase II beta
chain [Arabidopsis thaliana]
Length = 287
Score = 271 bits (693), Expect = 7e-72
Identities = 125/139 (89%), Positives = 132/139 (94%)
Frame = -1
Query: 728 ESSHGDMFTEEXNELIESAAEMLYGLIHARYILTSQGMAAMLDKYKNYDFGRCPRVYCSG 549
ESS G+MFTEE NELIESAAEMLYGLIHARYILTS+G+AAMLDKYKNYDFGRCPRVYC G
Sbjct: 149 ESSQGEMFTEEQNELIESAAEMLYGLIHARYILTSKGLAAMLDKYKNYDFGRCPRVYCCG 208
Query: 548 QPCLPVGQSDIPRSSTVKIYCPRCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGQLKP 369
QPCLPVGQSD+PRSSTVKIYCP+CEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYG LKP
Sbjct: 209 QPCLPVGQSDLPRSSTVKIYCPKCEDIYYPRSKYQGNIDGAYFGTTFPHLFLMTYGHLKP 268
Query: 368 QKPSQSYVPRVFGFKLHKP 312
K +Q+YV RVFGFKLHKP
Sbjct: 269 AKATQNYVQRVFGFKLHKP 287
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 657,114,488
Number of Sequences: 1393205
Number of extensions: 14089633
Number of successful extensions: 54643
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 38472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52950
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34343566934
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
