Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000896A_C01 KMC000896A_c01
(574 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_190358.2| ABC transporter family protein; protein id: At3... 76 1e-23
pir||T07713 probable ABC-type transport protein T23J7.70 - Arabi... 76 1e-23
ref|NP_190359.2| ABC transporter family protein; protein id: At3... 73 8e-23
pir||T07714 probable ABC-type transport protein T23J7.80 - Arabi... 73 8e-23
ref|NP_200978.1| ABC transporter family protein; protein id: At5... 77 1e-22
>ref|NP_190358.2| ABC transporter family protein; protein id: At3g47740.1 [Arabidopsis
thaliana]
Length = 947
Score = 75.9 bits (185), Expect(2) = 1e-23
Identities = 36/50 (72%), Positives = 42/50 (84%)
Frame = -3
Query: 479 VPKDDVRIGSVFRAVETAKRNFTVSAWGLADTTLEDVFIKVARGAKAFDI 330
+PKD+VRI VF+ VE AK NF V AWGLADTTLEDVFIKVAR A+AF++
Sbjct: 896 IPKDEVRISEVFQVVEKAKSNFKVFAWGLADTTLEDVFIKVARTAQAFNV 945
Score = 55.5 bits (132), Expect(2) = 1e-23
Identities = 25/35 (71%), Positives = 29/35 (82%)
Frame = -1
Query: 574 SVDHEKDVENLVQKLSPNANKIYHISGTQKFEFQK 470
S +HEKDVE LVQ++SPN KIYHI+GTQKFE K
Sbjct: 864 SSEHEKDVEMLVQEVSPNVKKIYHIAGTQKFEIPK 898
>pir||T07713 probable ABC-type transport protein T23J7.70 - Arabidopsis thaliana
gi|4741191|emb|CAB41857.1| ABC transporter-like protein
[Arabidopsis thaliana]
Length = 925
Score = 75.9 bits (185), Expect(2) = 1e-23
Identities = 36/50 (72%), Positives = 42/50 (84%)
Frame = -3
Query: 479 VPKDDVRIGSVFRAVETAKRNFTVSAWGLADTTLEDVFIKVARGAKAFDI 330
+PKD+VRI VF+ VE AK NF V AWGLADTTLEDVFIKVAR A+AF++
Sbjct: 874 IPKDEVRISEVFQVVEKAKSNFKVFAWGLADTTLEDVFIKVARTAQAFNV 923
Score = 55.5 bits (132), Expect(2) = 1e-23
Identities = 25/35 (71%), Positives = 29/35 (82%)
Frame = -1
Query: 574 SVDHEKDVENLVQKLSPNANKIYHISGTQKFEFQK 470
S +HEKDVE LVQ++SPN KIYHI+GTQKFE K
Sbjct: 842 SSEHEKDVEMLVQEVSPNVKKIYHIAGTQKFEIPK 876
>ref|NP_190359.2| ABC transporter family protein; protein id: At3g47750.1 [Arabidopsis
thaliana]
Length = 915
Score = 72.8 bits (177), Expect(2) = 8e-23
Identities = 35/50 (70%), Positives = 42/50 (84%)
Frame = -3
Query: 479 VPKDDVRIGSVFRAVETAKRNFTVSAWGLADTTLEDVFIKVARGAKAFDI 330
+PKD+VRI +F+AVE AK NF V AWGLADTTLEDVFIKVAR A+A ++
Sbjct: 864 IPKDEVRIAELFQAVEKAKGNFRVFAWGLADTTLEDVFIKVARTAQASNV 913
Score = 55.8 bits (133), Expect(2) = 8e-23
Identities = 25/35 (71%), Positives = 29/35 (82%)
Frame = -1
Query: 574 SVDHEKDVENLVQKLSPNANKIYHISGTQKFEFQK 470
S +HEKDVE L+Q +SPNA KIYHI+GTQKFE K
Sbjct: 832 SSEHEKDVEMLIQDVSPNAKKIYHIAGTQKFEIPK 866
>pir||T07714 probable ABC-type transport protein T23J7.80 - Arabidopsis thaliana
gi|4741192|emb|CAB41858.1| ABC transporter-like protein
[Arabidopsis thaliana]
Length = 895
Score = 72.8 bits (177), Expect(2) = 8e-23
Identities = 35/50 (70%), Positives = 42/50 (84%)
Frame = -3
Query: 479 VPKDDVRIGSVFRAVETAKRNFTVSAWGLADTTLEDVFIKVARGAKAFDI 330
+PKD+VRI +F+AVE AK NF V AWGLADTTLEDVFIKVAR A+A ++
Sbjct: 844 IPKDEVRIAELFQAVEKAKGNFRVFAWGLADTTLEDVFIKVARTAQASNV 893
Score = 55.8 bits (133), Expect(2) = 8e-23
Identities = 25/35 (71%), Positives = 29/35 (82%)
Frame = -1
Query: 574 SVDHEKDVENLVQKLSPNANKIYHISGTQKFEFQK 470
S +HEKDVE L+Q +SPNA KIYHI+GTQKFE K
Sbjct: 812 SSEHEKDVEMLIQDVSPNAKKIYHIAGTQKFEIPK 846
>ref|NP_200978.1| ABC transporter family protein; protein id: At5g61700.1
[Arabidopsis thaliana]
Length = 888
Score = 76.6 bits (187), Expect(2) = 1e-22
Identities = 38/48 (79%), Positives = 41/48 (85%)
Frame = -3
Query: 479 VPKDDVRIGSVFRAVETAKRNFTVSAWGLADTTLEDVFIKVARGAKAF 336
+PK +VRI VFRAVE AK NFTV AWGLADTTLEDVFIKVAR A+AF
Sbjct: 837 LPKQEVRIAEVFRAVEKAKANFTVFAWGLADTTLEDVFIKVARTAQAF 884
Score = 51.2 bits (121), Expect(2) = 1e-22
Identities = 22/35 (62%), Positives = 28/35 (79%)
Frame = -1
Query: 574 SVDHEKDVENLVQKLSPNANKIYHISGTQKFEFQK 470
S HE++VE LV+ +SPNA KIYH++GTQKFE K
Sbjct: 805 SSKHEEEVERLVESVSPNAKKIYHLAGTQKFELPK 839
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 433,103,279
Number of Sequences: 1393205
Number of extensions: 8385808
Number of successful extensions: 17364
Number of sequences better than 10.0: 99
Number of HSP's better than 10.0 without gapping: 16884
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17354
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
