Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000895A_C01 KMC000895A_c01
(867 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||F86291 hypothetical protein F7H2.8 [imported] - Arabidopsis... 183 3e-45
ref|NP_563980.1| expressed protein; protein id: At1g15740.1, sup... 183 3e-45
gb|AAK28636.1|AF360339_1 unknown protein [Arabidopsis thaliana] 183 3e-45
gb|AAN13089.1| unknown protein [Arabidopsis thaliana] 183 3e-45
gb|AAN62335.1|AF506028_2 CTV.1 [Poncirus trifoliata] 130 4e-31
>pir||F86291 hypothetical protein F7H2.8 [imported] - Arabidopsis thaliana
gi|8927653|gb|AAF82144.1|AC034256_8 Contains similarity
to F-box protein FBL2 from Homo sapiens gb|AF176518 and
contains multiple Leucine Rich PF|00560 repeats. ESTs
gb|Z34572, gb|Z34571, gb|AI100681, gb|AI100675,
gb|AA395320, gb|AI100674, gb|AA651378, gb|AA007067,
gb|T46145, gb|T22090, gb|AI995016, gb|H36884,
gb|AI995066, gb|H37061, gb|T43537 come from this gene.
[Arabidopsis thaliana]
Length = 568
Score = 183 bits (464), Expect = 3e-45
Identities = 99/161 (61%), Positives = 119/161 (73%), Gaps = 10/161 (6%)
Frame = -2
Query: 866 LNLDARQITDAGLANLTSLSGLITLDLFGARISDSGTAYLRSFKKLQSLEICGGGISDAG 687
LNLDAR +TDAGL+ LTSL+GL LDLFGARI+DSGT +LR+ KKLQSLEICGGG++D G
Sbjct: 418 LNLDARHVTDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDTG 477
Query: 686 VKNIREIVSLTQLNLSQNGNLTDRTLELISGMTALRSLNVSNCRITNEGLRHLKPFKNLR 507
VKNI+++ SLT LNLSQN NLTD+TLELISG+T L SLNVSN R+++ GLRHLKP KNLR
Sbjct: 478 VKNIKDLSSLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHLKPLKNLR 537
Query: 506 SAYLGIVQGYCF*N*EAC----------SQPELPNSLSFRP 414
S L E+C +LPN ++FRP
Sbjct: 538 SLTL-----------ESCKLSANDIRKLQATDLPNLVNFRP 567
Score = 64.7 bits (156), Expect = 2e-09
Identities = 40/119 (33%), Positives = 66/119 (54%)
Frame = -2
Query: 866 LNLDARQITDAGLANLTSLSGLITLDLFGARISDSGTAYLRSFKKLQSLEICGGGISDAG 687
LNL IT++ L +L L+ L +L+L RI D G +L +L+SLE+ + G
Sbjct: 322 LNLGMNNITNSCLVHLKGLTKLESLNLDSCRIGDEGLVHLSGMLELKSLELSDTEVGSNG 381
Query: 686 VKNIREIVSLTQLNLSQNGNLTDRTLELISGMTALRSLNVSNCRITNEGLRHLKPFKNL 510
++++ + +L +NLS +TD L +SG+T+LR+LN+ +T+ GL L L
Sbjct: 382 LRHLSGLSNLESINLSFT-VVTDSGLRKLSGLTSLRTLNLDARHVTDAGLSALTSLTGL 439
Score = 59.7 bits (143), Expect = 6e-08
Identities = 44/125 (35%), Positives = 65/125 (51%), Gaps = 8/125 (6%)
Frame = -2
Query: 845 ITDAGLANLTSLSGLITLDLFGAR-----ISDSGTAYLR---SFKKLQSLEICGGGISDA 690
ITDA + L+ L+ L L+L G R D+ T R + L L + SD+
Sbjct: 249 ITDADMEPLSGLNKLNLLNLEGCRHVTAACLDTLTGLYRHPHALAGLMYLNLNRCNFSDS 308
Query: 689 GVKNIREIVSLTQLNLSQNGNLTDRTLELISGMTALRSLNVSNCRITNEGLRHLKPFKNL 510
G + ++++L LNL N N+T+ L + G+T L SLN+ +CRI +EGL HL L
Sbjct: 309 GCEKFSDLINLKILNLGMN-NITNSCLVHLKGLTKLESLNLDSCRIGDEGLVHLSGMLEL 367
Query: 509 RSAYL 495
+S L
Sbjct: 368 KSLEL 372
Score = 55.8 bits (133), Expect = 8e-07
Identities = 38/124 (30%), Positives = 64/124 (50%)
Frame = -2
Query: 866 LNLDARQITDAGLANLTSLSGLITLDLFGARISDSGTAYLRSFKKLQSLEICGGGISDAG 687
LNL+ +D+G + L L L+L I++S +L+ KL+SL + I D G
Sbjct: 298 LNLNRCNFSDSGCEKFSDLINLKILNLGMNNITNSCLVHLKGLTKLESLNLDSCRIGDEG 357
Query: 686 VKNIREIVSLTQLNLSQNGNLTDRTLELISGMTALRSLNVSNCRITNEGLRHLKPFKNLR 507
+ ++ ++ L L LS + L +SG++ L S+N+S +T+ GLR L +LR
Sbjct: 358 LVHLSGMLELKSLELSDT-EVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKLSGLTSLR 416
Query: 506 SAYL 495
+ L
Sbjct: 417 TLNL 420
Score = 49.7 bits (117), Expect = 6e-05
Identities = 33/101 (32%), Positives = 53/101 (51%), Gaps = 3/101 (2%)
Frame = -2
Query: 848 QITDAGLANLTSLSGLITLDLF-GARISDSGTAYLRSFKKLQSLEI--CGGGISDAGVKN 678
QI++ GL +L+ LS L +L A I+ G L + L+ L++ C G D G+ +
Sbjct: 174 QISNRGLVHLSGLSNLTSLSFRRNAAITAQGMRALSNLVNLKKLDLEKCPG--IDGGLVH 231
Query: 677 IREIVSLTQLNLSQNGNLTDRTLELISGMTALRSLNVSNCR 555
+R + L LN+ +TD +E +SG+ L LN+ CR
Sbjct: 232 LRALTKLESLNIKWCNCITDADMEPLSGLNKLNLLNLEGCR 272
Score = 40.8 bits (94), Expect = 0.027
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Frame = -2
Query: 731 LQSLEICGGGISDAGVKNIREIVSLTQLNLSQNGNLTDRTLELISGMTALRSLNV-SNCR 555
L S++ G I+D+G+ +++ +L LN + +++R L +SG++ L SL+ N
Sbjct: 140 LLSVDFSGSDITDSGLVSLKGCTNLESLNFNFCDQISNRGLVHLSGLSNLTSLSFRRNAA 199
Query: 554 ITNEGLRHLKPFKNLR 507
IT +G+R L NL+
Sbjct: 200 ITAQGMRALSNLVNLK 215
Score = 33.9 bits (76), Expect = 3.2
Identities = 22/54 (40%), Positives = 30/54 (54%), Gaps = 1/54 (1%)
Frame = -2
Query: 662 SLTQLNLSQNGNLTDRTLELISGMTALRSLNVSNC-RITNEGLRHLKPFKNLRS 504
SL ++ S ++TD L + G T L SLN + C +I+N GL HL NL S
Sbjct: 139 SLLSVDFS-GSDITDSGLVSLKGCTNLESLNFNFCDQISNRGLVHLSGLSNLTS 191
>ref|NP_563980.1| expressed protein; protein id: At1g15740.1, supported by cDNA:
gi_14423507, supported by cDNA: gi_20148356 [Arabidopsis
thaliana] gi|14423508|gb|AAK62436.1|AF386991_1 Unknown
protein [Arabidopsis thaliana]
gi|20148357|gb|AAM10069.1| unknown protein [Arabidopsis
thaliana]
Length = 332
Score = 183 bits (464), Expect = 3e-45
Identities = 99/161 (61%), Positives = 119/161 (73%), Gaps = 10/161 (6%)
Frame = -2
Query: 866 LNLDARQITDAGLANLTSLSGLITLDLFGARISDSGTAYLRSFKKLQSLEICGGGISDAG 687
LNLDAR +TDAGL+ LTSL+GL LDLFGARI+DSGT +LR+ KKLQSLEICGGG++D G
Sbjct: 182 LNLDARHVTDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDTG 241
Query: 686 VKNIREIVSLTQLNLSQNGNLTDRTLELISGMTALRSLNVSNCRITNEGLRHLKPFKNLR 507
VKNI+++ SLT LNLSQN NLTD+TLELISG+T L SLNVSN R+++ GLRHLKP KNLR
Sbjct: 242 VKNIKDLSSLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHLKPLKNLR 301
Query: 506 SAYLGIVQGYCF*N*EAC----------SQPELPNSLSFRP 414
S L E+C +LPN ++FRP
Sbjct: 302 SLTL-----------ESCKLSANDIRKLQATDLPNLVNFRP 331
Score = 64.7 bits (156), Expect = 2e-09
Identities = 40/119 (33%), Positives = 66/119 (54%)
Frame = -2
Query: 866 LNLDARQITDAGLANLTSLSGLITLDLFGARISDSGTAYLRSFKKLQSLEICGGGISDAG 687
LNL IT++ L +L L+ L +L+L RI D G +L +L+SLE+ + G
Sbjct: 86 LNLGMNNITNSCLVHLKGLTKLESLNLDSCRIGDEGLVHLSGMLELKSLELSDTEVGSNG 145
Query: 686 VKNIREIVSLTQLNLSQNGNLTDRTLELISGMTALRSLNVSNCRITNEGLRHLKPFKNL 510
++++ + +L +NLS +TD L +SG+T+LR+LN+ +T+ GL L L
Sbjct: 146 LRHLSGLSNLESINLSFT-VVTDSGLRKLSGLTSLRTLNLDARHVTDAGLSALTSLTGL 203
Score = 64.7 bits (156), Expect = 2e-09
Identities = 43/125 (34%), Positives = 68/125 (54%), Gaps = 1/125 (0%)
Frame = -2
Query: 866 LNLDARQITDAGLANLTSLSGLITLDLFGAR-ISDSGTAYLRSFKKLQSLEICGGGISDA 690
L + +ITD G++ L L+ L L+L G R ++ + L + L L + SD+
Sbjct: 13 LQICCSKITDIGISYLKGLNKLNLLNLEGCRHVTAACLDTLTALAGLMYLNLNRCNFSDS 72
Query: 689 GVKNIREIVSLTQLNLSQNGNLTDRTLELISGMTALRSLNVSNCRITNEGLRHLKPFKNL 510
G + ++++L LNL N N+T+ L + G+T L SLN+ +CRI +EGL HL L
Sbjct: 73 GCEKFSDLINLKILNLGMN-NITNSCLVHLKGLTKLESLNLDSCRIGDEGLVHLSGMLEL 131
Query: 509 RSAYL 495
+S L
Sbjct: 132 KSLEL 136
Score = 55.8 bits (133), Expect = 8e-07
Identities = 38/124 (30%), Positives = 64/124 (50%)
Frame = -2
Query: 866 LNLDARQITDAGLANLTSLSGLITLDLFGARISDSGTAYLRSFKKLQSLEICGGGISDAG 687
LNL+ +D+G + L L L+L I++S +L+ KL+SL + I D G
Sbjct: 62 LNLNRCNFSDSGCEKFSDLINLKILNLGMNNITNSCLVHLKGLTKLESLNLDSCRIGDEG 121
Query: 686 VKNIREIVSLTQLNLSQNGNLTDRTLELISGMTALRSLNVSNCRITNEGLRHLKPFKNLR 507
+ ++ ++ L L LS + L +SG++ L S+N+S +T+ GLR L +LR
Sbjct: 122 LVHLSGMLELKSLELSDT-EVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKLSGLTSLR 180
Query: 506 SAYL 495
+ L
Sbjct: 181 TLNL 184
Score = 45.1 bits (105), Expect = 0.001
Identities = 23/81 (28%), Positives = 42/81 (51%)
Frame = -2
Query: 731 LQSLEICGGGISDAGVKNIREIVSLTQLNLSQNGNLTDRTLELISGMTALRSLNVSNCRI 552
L+SL+IC I+D G+ ++ + L LNL ++T L+ ++ + L LN++ C
Sbjct: 10 LRSLQICCSKITDIGISYLKGLNKLNLLNLEGCRHVTAACLDTLTALAGLMYLNLNRCNF 69
Query: 551 TNEGLRHLKPFKNLRSAYLGI 489
++ G NL+ LG+
Sbjct: 70 SDSGCEKFSDLINLKILNLGM 90
>gb|AAK28636.1|AF360339_1 unknown protein [Arabidopsis thaliana]
Length = 585
Score = 183 bits (464), Expect = 3e-45
Identities = 99/161 (61%), Positives = 119/161 (73%), Gaps = 10/161 (6%)
Frame = -2
Query: 866 LNLDARQITDAGLANLTSLSGLITLDLFGARISDSGTAYLRSFKKLQSLEICGGGISDAG 687
LNLDAR +TDAGL+ LTSL+GL LDLFGARI+DSGT +LR+ KKLQSLEICGGG++D G
Sbjct: 435 LNLDARHVTDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDTG 494
Query: 686 VKNIREIVSLTQLNLSQNGNLTDRTLELISGMTALRSLNVSNCRITNEGLRHLKPFKNLR 507
VKNI+++ SLT LNLSQN NLTD+TLELISG+T L SLNVSN R+++ GLRHLKP KNLR
Sbjct: 495 VKNIKDLSSLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHLKPLKNLR 554
Query: 506 SAYLGIVQGYCF*N*EAC----------SQPELPNSLSFRP 414
S L E+C +LPN ++FRP
Sbjct: 555 SLTL-----------ESCKLSANDIRKLQATDLPNLVNFRP 584
Score = 65.5 bits (158), Expect = 1e-09
Identities = 45/142 (31%), Positives = 69/142 (47%), Gaps = 25/142 (17%)
Frame = -2
Query: 845 ITDAGLANLTSLSGLITLDLFGARISDSGTAYLRSFKKLQSLEICGG------------- 705
ITDA + L+ L+ L L + ++I+D G +YL+ KL L + G
Sbjct: 249 ITDADMEPLSVLTNLRRLQICCSKITDIGISYLKGLNKLNLLNLEGCRHVTAACLDTLTA 308
Query: 704 ------------GISDAGVKNIREIVSLTQLNLSQNGNLTDRTLELISGMTALRSLNVSN 561
SD+G + ++++L LNL N N+T+ L + G+T L SLN+ +
Sbjct: 309 LAGLMYLNLNRCNFSDSGCEKFSDLINLKILNLGMN-NITNSCLVHLKGLTKLESLNLDS 367
Query: 560 CRITNEGLRHLKPFKNLRSAYL 495
CRI +EGL HL L+S L
Sbjct: 368 CRIGDEGLVHLSGMLELKSLEL 389
Score = 64.7 bits (156), Expect = 2e-09
Identities = 40/119 (33%), Positives = 66/119 (54%)
Frame = -2
Query: 866 LNLDARQITDAGLANLTSLSGLITLDLFGARISDSGTAYLRSFKKLQSLEICGGGISDAG 687
LNL IT++ L +L L+ L +L+L RI D G +L +L+SLE+ + G
Sbjct: 339 LNLGMNNITNSCLVHLKGLTKLESLNLDSCRIGDEGLVHLSGMLELKSLELSDTEVGSNG 398
Query: 686 VKNIREIVSLTQLNLSQNGNLTDRTLELISGMTALRSLNVSNCRITNEGLRHLKPFKNL 510
++++ + +L +NLS +TD L +SG+T+LR+LN+ +T+ GL L L
Sbjct: 399 LRHLSGLSNLESINLSFT-VVTDSGLRKLSGLTSLRTLNLDARHVTDAGLSALTSLTGL 456
Score = 55.8 bits (133), Expect = 8e-07
Identities = 38/124 (30%), Positives = 64/124 (50%)
Frame = -2
Query: 866 LNLDARQITDAGLANLTSLSGLITLDLFGARISDSGTAYLRSFKKLQSLEICGGGISDAG 687
LNL+ +D+G + L L L+L I++S +L+ KL+SL + I D G
Sbjct: 315 LNLNRCNFSDSGCEKFSDLINLKILNLGMNNITNSCLVHLKGLTKLESLNLDSCRIGDEG 374
Query: 686 VKNIREIVSLTQLNLSQNGNLTDRTLELISGMTALRSLNVSNCRITNEGLRHLKPFKNLR 507
+ ++ ++ L L LS + L +SG++ L S+N+S +T+ GLR L +LR
Sbjct: 375 LVHLSGMLELKSLELSDT-EVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKLSGLTSLR 433
Query: 506 SAYL 495
+ L
Sbjct: 434 TLNL 437
Score = 52.0 bits (123), Expect = 1e-05
Identities = 34/127 (26%), Positives = 63/127 (48%), Gaps = 1/127 (0%)
Frame = -2
Query: 866 LNLDARQITDAGLANLTSLSGLITLDLFGAR-ISDSGTAYLRSFKKLQSLEICGGGISDA 690
L+L+ D GL +L +L+ L +L++ I+D+ L L+ L+IC I+D
Sbjct: 217 LDLEKCPGIDGGLVHLRALTKLESLNIKWCNCITDADMEPLSVLTNLRRLQICCSKITDI 276
Query: 689 GVKNIREIVSLTQLNLSQNGNLTDRTLELISGMTALRSLNVSNCRITNEGLRHLKPFKNL 510
G+ ++ + L LNL ++T L+ ++ + L LN++ C ++ G NL
Sbjct: 277 GISYLKGLNKLNLLNLEGCRHVTAACLDTLTALAGLMYLNLNRCNFSDSGCEKFSDLINL 336
Query: 509 RSAYLGI 489
+ LG+
Sbjct: 337 KILNLGM 343
Score = 40.8 bits (94), Expect = 0.027
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Frame = -2
Query: 731 LQSLEICGGGISDAGVKNIREIVSLTQLNLSQNGNLTDRTLELISGMTALRSLNV-SNCR 555
L S++ G I+D+G+ +++ +L LN + +++R L +SG++ L SL+ N
Sbjct: 140 LLSVDFSGSDITDSGLVSLKGCTNLESLNFNFCDQISNRGLVHLSGLSNLTSLSFRRNAA 199
Query: 554 ITNEGLRHLKPFKNLR 507
IT +G+R L NL+
Sbjct: 200 ITAQGMRALSNLVNLK 215
Score = 33.9 bits (76), Expect = 3.2
Identities = 22/54 (40%), Positives = 30/54 (54%), Gaps = 1/54 (1%)
Frame = -2
Query: 662 SLTQLNLSQNGNLTDRTLELISGMTALRSLNVSNC-RITNEGLRHLKPFKNLRS 504
SL ++ S ++TD L + G T L SLN + C +I+N GL HL NL S
Sbjct: 139 SLLSVDFS-GSDITDSGLVSLKGCTNLESLNFNFCDQISNRGLVHLSGLSNLTS 191
>gb|AAN13089.1| unknown protein [Arabidopsis thaliana]
Length = 585
Score = 183 bits (464), Expect = 3e-45
Identities = 99/161 (61%), Positives = 119/161 (73%), Gaps = 10/161 (6%)
Frame = -2
Query: 866 LNLDARQITDAGLANLTSLSGLITLDLFGARISDSGTAYLRSFKKLQSLEICGGGISDAG 687
LNLDAR +TDAGL+ LTSL+GL LDLFGARI+DSGT +LR+ KKLQSLEICGGG++D G
Sbjct: 435 LNLDARHVTDAGLSALTSLTGLTHLDLFGARITDSGTNHLRNLKKLQSLEICGGGLTDTG 494
Query: 686 VKNIREIVSLTQLNLSQNGNLTDRTLELISGMTALRSLNVSNCRITNEGLRHLKPFKNLR 507
VKNI+++ SLT LNLSQN NLTD+TLELISG+T L SLNVSN R+++ GLRHLKP KNLR
Sbjct: 495 VKNIKDLSSLTLLNLSQNSNLTDKTLELISGLTGLVSLNVSNSRVSSSGLRHLKPLKNLR 554
Query: 506 SAYLGIVQGYCF*N*EAC----------SQPELPNSLSFRP 414
S L E+C +LPN ++FRP
Sbjct: 555 SLTL-----------ESCKLSANDIRKLQATDLPNLVNFRP 584
Score = 66.2 bits (160), Expect = 6e-10
Identities = 45/142 (31%), Positives = 70/142 (48%), Gaps = 25/142 (17%)
Frame = -2
Query: 845 ITDAGLANLTSLSGLITLDLFGARISDSGTAYLRSFKKLQSLEICGG------------- 705
ITDA + L+ L+ L +L + ++I+D G +YL+ KL L + G
Sbjct: 249 ITDADMEPLSVLTNLRSLQICCSKITDIGISYLKGLNKLNLLNLEGCRHVTAACLDTLTA 308
Query: 704 ------------GISDAGVKNIREIVSLTQLNLSQNGNLTDRTLELISGMTALRSLNVSN 561
SD+G + ++++L LNL N N+T+ L + G+T L SLN+ +
Sbjct: 309 LAGLMYLNLNRCNFSDSGCEKFSDLINLKILNLGMN-NITNSCLVHLKGLTKLESLNLDS 367
Query: 560 CRITNEGLRHLKPFKNLRSAYL 495
CRI +EGL HL L+S L
Sbjct: 368 CRIGDEGLVHLSGMLELKSLEL 389
Score = 64.7 bits (156), Expect = 2e-09
Identities = 40/119 (33%), Positives = 66/119 (54%)
Frame = -2
Query: 866 LNLDARQITDAGLANLTSLSGLITLDLFGARISDSGTAYLRSFKKLQSLEICGGGISDAG 687
LNL IT++ L +L L+ L +L+L RI D G +L +L+SLE+ + G
Sbjct: 339 LNLGMNNITNSCLVHLKGLTKLESLNLDSCRIGDEGLVHLSGMLELKSLELSDTEVGSNG 398
Query: 686 VKNIREIVSLTQLNLSQNGNLTDRTLELISGMTALRSLNVSNCRITNEGLRHLKPFKNL 510
++++ + +L +NLS +TD L +SG+T+LR+LN+ +T+ GL L L
Sbjct: 399 LRHLSGLSNLESINLSFT-VVTDSGLRKLSGLTSLRTLNLDARHVTDAGLSALTSLTGL 456
Score = 55.8 bits (133), Expect = 8e-07
Identities = 38/124 (30%), Positives = 64/124 (50%)
Frame = -2
Query: 866 LNLDARQITDAGLANLTSLSGLITLDLFGARISDSGTAYLRSFKKLQSLEICGGGISDAG 687
LNL+ +D+G + L L L+L I++S +L+ KL+SL + I D G
Sbjct: 315 LNLNRCNFSDSGCEKFSDLINLKILNLGMNNITNSCLVHLKGLTKLESLNLDSCRIGDEG 374
Query: 686 VKNIREIVSLTQLNLSQNGNLTDRTLELISGMTALRSLNVSNCRITNEGLRHLKPFKNLR 507
+ ++ ++ L L LS + L +SG++ L S+N+S +T+ GLR L +LR
Sbjct: 375 LVHLSGMLELKSLELSDT-EVGSNGLRHLSGLSNLESINLSFTVVTDSGLRKLSGLTSLR 433
Query: 506 SAYL 495
+ L
Sbjct: 434 TLNL 437
Score = 53.9 bits (128), Expect = 3e-06
Identities = 35/127 (27%), Positives = 64/127 (49%), Gaps = 1/127 (0%)
Frame = -2
Query: 866 LNLDARQITDAGLANLTSLSGLITLDLFGAR-ISDSGTAYLRSFKKLQSLEICGGGISDA 690
L+L+ D GL +L +L+ L +L++ I+D+ L L+SL+IC I+D
Sbjct: 217 LDLEKCPGIDGGLVHLRALTKLESLNIKWCNCITDADMEPLSVLTNLRSLQICCSKITDI 276
Query: 689 GVKNIREIVSLTQLNLSQNGNLTDRTLELISGMTALRSLNVSNCRITNEGLRHLKPFKNL 510
G+ ++ + L LNL ++T L+ ++ + L LN++ C ++ G NL
Sbjct: 277 GISYLKGLNKLNLLNLEGCRHVTAACLDTLTALAGLMYLNLNRCNFSDSGCEKFSDLINL 336
Query: 509 RSAYLGI 489
+ LG+
Sbjct: 337 KILNLGM 343
Score = 40.8 bits (94), Expect = 0.027
Identities = 24/76 (31%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Frame = -2
Query: 731 LQSLEICGGGISDAGVKNIREIVSLTQLNLSQNGNLTDRTLELISGMTALRSLNV-SNCR 555
L S++ G I+D+G+ +++ +L LN + +++R L +SG++ L SL+ N
Sbjct: 140 LLSVDFSGSDITDSGLVSLKGCTNLESLNFNFCDQISNRGLVHLSGLSNLTSLSFRRNAA 199
Query: 554 ITNEGLRHLKPFKNLR 507
IT +G+R L NL+
Sbjct: 200 ITAQGMRALSNLVNLK 215
Score = 33.9 bits (76), Expect = 3.2
Identities = 22/54 (40%), Positives = 30/54 (54%), Gaps = 1/54 (1%)
Frame = -2
Query: 662 SLTQLNLSQNGNLTDRTLELISGMTALRSLNVSNC-RITNEGLRHLKPFKNLRS 504
SL ++ S ++TD L + G T L SLN + C +I+N GL HL NL S
Sbjct: 139 SLLSVDFS-GSDITDSGLVSLKGCTNLESLNFNFCDQISNRGLVHLSGLSNLTS 191
>gb|AAN62335.1|AF506028_2 CTV.1 [Poncirus trifoliata]
Length = 205
Score = 130 bits (327), Expect(2) = 4e-31
Identities = 73/112 (65%), Positives = 84/112 (74%)
Frame = -2
Query: 866 LNLDARQITDAGLANLTSLSGLITLDLFGARISDSGTAYLRSFKKLQSLEICGGGISDAG 687
LNLDARQITD GLA LTS LDLFGARI+DSG AYLR+FK L+SLEICGGG++DAG
Sbjct: 75 LNLDARQITDTGLAALTSAH----LDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAG 130
Query: 686 VKNIREIVSLTQLNLSQNGNLTDRTLELISGMTALRSLNVSNCRITNEGLRH 531
VK+I+++ SL LNLSQN NLTD+TLE VSN RIT+ GLRH
Sbjct: 131 VKHIKDLSSLALLNLSQNCNLTDKTLEY-----------VSNSRITSAGLRH 171
Score = 43.9 bits (102), Expect = 0.003
Identities = 40/129 (31%), Positives = 58/129 (44%), Gaps = 8/129 (6%)
Frame = -2
Query: 866 LNLDARQITDAGLANLTSLS------GLITLDLFGARISDSGTAYLRSFKKLQSLEICGG 705
LNL+ Q++D G ++L + L I D G SF
Sbjct: 7 LNLNRCQLSDDGCEKFSNLGFNEITDECLVYHLDSCGIGDEGLVNYLSFT---------- 56
Query: 704 GISDAGVKNIREIVSLTQLNLSQNGNLTDRTLELISGMTALRS--LNVSNCRITNEGLRH 531
GISD ++ + + SL LNL +TD +G+ AL S L++ RIT+ G +
Sbjct: 57 GISDGSLRKLAGLSSLKSLNLDAR-QITD------TGLAALTSAHLDLFGARITDSGAAY 109
Query: 530 LKPFKNLRS 504
L+ FKNLRS
Sbjct: 110 LRNFKNLRS 118
Score = 42.4 bits (98), Expect = 0.009
Identities = 34/119 (28%), Positives = 52/119 (43%), Gaps = 1/119 (0%)
Frame = -2
Query: 863 NLDARQITDAGLANLTSLSGLITLDLFGARISDSGTAYLRSFKKLQSLEICGGGISDAGV 684
+LD+ I D GL N S +G ISD L L+SL + I+D G
Sbjct: 38 HLDSCGIGDEGLVNYLSFTG----------ISDGSLRKLAGLSSLKSLNLDARQITDTG- 86
Query: 683 KNIREIVSLTQLNLSQNG-NLTDRTLELISGMTALRSLNVSNCRITNEGLRHLKPFKNL 510
+ +LT +L G +TD + LRSL + +T+ G++H+K +L
Sbjct: 87 -----LAALTSAHLDLFGARITDSGAAYLRNFKNLRSLEICGGGLTDAGVKHIKDLSSL 140
Score = 26.9 bits (58), Expect(2) = 4e-31
Identities = 11/14 (78%), Positives = 14/14 (99%)
Frame = -3
Query: 496 LESCKVTASEIKKL 455
LESCKVTA++IK+L
Sbjct: 173 LESCKVTANDIKRL 186
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 703,208,023
Number of Sequences: 1393205
Number of extensions: 14890115
Number of successful extensions: 38173
Number of sequences better than 10.0: 278
Number of HSP's better than 10.0 without gapping: 36206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38012
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 46267227342
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
