Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000894A_C01 KMC000894A_c01
(805 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q40195|R11E_LOTJA Ras-related protein Rab11E gi|1370150|emb|C... 422 e-117
gb|AAN03473.1| small GTP-binding protein [Glycine max] 381 e-105
pir||T06448 GTP-binding protein - garden pea gi|303746|dbj|BAA02... 380 e-104
sp|Q40194|R11D_LOTJA Ras-related protein Rab11D gi|1370148|emb|C... 377 e-104
emb|CAB65172.1| Rab11 GTPase [Lycopersicon esculentum] 361 8e-99
>sp|Q40195|R11E_LOTJA Ras-related protein Rab11E gi|1370150|emb|CAA98181.1| RAB11E [Lotus
japonicus]
Length = 218
Score = 422 bits (1086), Expect = e-117
Identities = 215/218 (98%), Positives = 216/218 (98%)
Frame = -2
Query: 744 MAGYKADDEYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDGK 565
MAGYKADDEYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDGK
Sbjct: 1 MAGYKADDEYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDGK 60
Query: 564 VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRSTTFETAGRWLKELRDHTDPKIV 385
VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRSTTFETAGRWLKELRDHTDP IV
Sbjct: 61 VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRSTTFETAGRWLKELRDHTDPNIV 120
Query: 384 VMLIGNKSDLRHLVTVSTEDGKAFAEKESLYFMETSALEATNVENAFSEVLTQIYRIVSQ 205
VMLIGNKSDLRHLVTVSTEDGKAFAEKESLYFMETSALEATNVENAFSEVLTQIYRIVS+
Sbjct: 121 VMLIGNKSDLRHLVTVSTEDGKAFAEKESLYFMETSALEATNVENAFSEVLTQIYRIVSK 180
Query: 204 RAVEAGDRASTSVVPSQGQTINVNEDSSVLNRYRCCSN 91
RAVEAGDR STSVVPSQGQTINVNEDSSVLNRYRCCSN
Sbjct: 181 RAVEAGDRPSTSVVPSQGQTINVNEDSSVLNRYRCCSN 218
>gb|AAN03473.1| small GTP-binding protein [Glycine max]
Length = 218
Score = 381 bits (979), Expect = e-105
Identities = 193/218 (88%), Positives = 201/218 (91%)
Frame = -2
Query: 744 MAGYKADDEYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDGK 565
MAGYK DDEYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNID K
Sbjct: 1 MAGYKGDDEYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDAK 60
Query: 564 VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRSTTFETAGRWLKELRDHTDPKIV 385
VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR TFE A RWLKELRDHTDP IV
Sbjct: 61 VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIV 120
Query: 384 VMLIGNKSDLRHLVTVSTEDGKAFAEKESLYFMETSALEATNVENAFSEVLTQIYRIVSQ 205
VMLIGNKSDLRHLV V TEDGK+FAEKESLYFMETSALEATNVENAF+EVL+QIYRIVS+
Sbjct: 121 VMLIGNKSDLRHLVAVPTEDGKSFAEKESLYFMETSALEATNVENAFTEVLSQIYRIVSK 180
Query: 204 RAVEAGDRASTSVVPSQGQTINVNEDSSVLNRYRCCSN 91
R VEAG AS+S VPS+GQTINV +DSSVL + CCSN
Sbjct: 181 RTVEAGKNASSSAVPSKGQTINVKDDSSVLKKIGCCSN 218
>pir||T06448 GTP-binding protein - garden pea gi|303746|dbj|BAA02114.1|
GTP-binding protein [Pisum sativum]
gi|738938|prf||2001457F GTP-binding protein
Length = 218
Score = 380 bits (976), Expect = e-104
Identities = 192/218 (88%), Positives = 201/218 (92%)
Frame = -2
Query: 744 MAGYKADDEYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDGK 565
MAGY+ADDEYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNID K
Sbjct: 1 MAGYRADDEYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDSK 60
Query: 564 VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRSTTFETAGRWLKELRDHTDPKIV 385
VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR TFE A RWLKELRDHTDP IV
Sbjct: 61 VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIV 120
Query: 384 VMLIGNKSDLRHLVTVSTEDGKAFAEKESLYFMETSALEATNVENAFSEVLTQIYRIVSQ 205
VMLIGNKSDLRHLV V TEDGK+FAE+ESLYFMETSALEATNVENAFSEVL+QIY IVS+
Sbjct: 121 VMLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFSEVLSQIYHIVSK 180
Query: 204 RAVEAGDRASTSVVPSQGQTINVNEDSSVLNRYRCCSN 91
+AVEAG+ S+S VPS GQTINV EDSSV R+ CCSN
Sbjct: 181 KAVEAGESGSSSAVPSIGQTINVKEDSSVFKRFGCCSN 218
>sp|Q40194|R11D_LOTJA Ras-related protein Rab11D gi|1370148|emb|CAA98180.1| RAB11D [Lotus
japonicus]
Length = 218
Score = 377 bits (969), Expect = e-104
Identities = 188/217 (86%), Positives = 201/217 (91%)
Frame = -2
Query: 744 MAGYKADDEYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDGK 565
M GY+ DDEYDYLFKLVLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFATK+LN+D K
Sbjct: 1 MGGYRTDDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAK 60
Query: 564 VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRSTTFETAGRWLKELRDHTDPKIV 385
V+KAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTR TFE A RWLKELRDHTDP IV
Sbjct: 61 VVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIV 120
Query: 384 VMLIGNKSDLRHLVTVSTEDGKAFAEKESLYFMETSALEATNVENAFSEVLTQIYRIVSQ 205
VMLIGNKSDLRHLV V TEDGK+FAE+ESLYFMETSALEATNVENAF+EVLTQIYRIVS+
Sbjct: 121 VMLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAFTEVLTQIYRIVSK 180
Query: 204 RAVEAGDRASTSVVPSQGQTINVNEDSSVLNRYRCCS 94
RAVEAGD S+S +PS+GQTINV EDSSVL R+ CCS
Sbjct: 181 RAVEAGDSGSSSGLPSKGQTINVKEDSSVLKRFGCCS 217
>emb|CAB65172.1| Rab11 GTPase [Lycopersicon esculentum]
Length = 218
Score = 361 bits (926), Expect = 8e-99
Identities = 177/218 (81%), Positives = 195/218 (89%)
Frame = -2
Query: 744 MAGYKADDEYDYLFKLVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATKSLNIDGK 565
MAGY+ DDEYDYLFKLVLIGDSGVGKSNLLSRFT+NEFNLESKSTIGVEFATKSLNIDGK
Sbjct: 1 MAGYRGDDEYDYLFKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKSLNIDGK 60
Query: 564 VIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRSTTFETAGRWLKELRDHTDPKIV 385
VIKAQIWDTAGQERYRAIT AYYRGAVGALLVYDVTR TFE RWLKELRDHTDP IV
Sbjct: 61 VIKAQIWDTAGQERYRAITIAYYRGAVGALLVYDVTRHVTFENVNRWLKELRDHTDPNIV 120
Query: 384 VMLIGNKSDLRHLVTVSTEDGKAFAEKESLYFMETSALEATNVENAFSEVLTQIYRIVSQ 205
VML+GNKSDLRHLV VSTE+ K+ AE+E+LYFMETSALEATNVENAF+E LTQIYRIVS+
Sbjct: 121 VMLLGNKSDLRHLVAVSTEEAKSLAEREALYFMETSALEATNVENAFTEALTQIYRIVSK 180
Query: 204 RAVEAGDRASTSVVPSQGQTINVNEDSSVLNRYRCCSN 91
+AVEAGD +TS P +GQTIN+ ++ S ++ CCS+
Sbjct: 181 KAVEAGDEGATSTAPPKGQTINIKDEGSAWKKFGCCSS 218
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 746,499,002
Number of Sequences: 1393205
Number of extensions: 17166365
Number of successful extensions: 60693
Number of sequences better than 10.0: 2333
Number of HSP's better than 10.0 without gapping: 56194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59099
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 40896270532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
