Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000890A_C01 KMC000890A_c01
(660 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC11043.1| unnamed protein product [Homo sapiens] 32 7.5
gb|AAH11959.1|AAH11959 hypothetical protein MGC10765 [Homo sapiens] 32 7.5
dbj|BAB15574.1| unnamed protein product [Homo sapiens] 32 7.5
>dbj|BAC11043.1| unnamed protein product [Homo sapiens]
Length = 412
Score = 32.0 bits (71), Expect = 7.5
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +3
Query: 438 ITTSTSSPGPRLDINPCHSSSS 503
+TTS+SS GPR+ +PCH S S
Sbjct: 206 LTTSSSSSGPRVSGSPCHHSDS 227
>gb|AAH11959.1|AAH11959 hypothetical protein MGC10765 [Homo sapiens]
Length = 258
Score = 32.0 bits (71), Expect = 7.5
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +3
Query: 438 ITTSTSSPGPRLDINPCHSSSS 503
+TTS+SS GPR+ +PCH S S
Sbjct: 52 LTTSSSSSGPRVSGSPCHHSDS 73
>dbj|BAB15574.1| unnamed protein product [Homo sapiens]
Length = 258
Score = 32.0 bits (71), Expect = 7.5
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +3
Query: 438 ITTSTSSPGPRLDINPCHSSSS 503
+TTS+SS GPR+ +PCH S S
Sbjct: 52 LTTSSSSSGPRVSGSPCHHSDS 73
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 544,411,558
Number of Sequences: 1393205
Number of extensions: 11381370
Number of successful extensions: 23310
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 22701
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23307
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28289785200
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
