Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000886A_C01 KMC000886A_c01
(600 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_179898.1| unknown protein; protein id: At2g23170.1, suppo... 99 3e-33
ref|NP_179101.1| putative auxin-regulated protein; protein id: A... 99 9e-33
ref|NP_195455.1| auxin-responsive GH3 - like protein; protein id... 97 1e-32
pir||T52435 GH3 homolog [imported] - Arabidopsis thaliana (fragm... 97 1e-32
pir||S17433 auxin-regulated protein GH3 - soybean gi|18591|emb|C... 100 1e-31
>ref|NP_179898.1| unknown protein; protein id: At2g23170.1, supported by cDNA:
gi_19699327 [Arabidopsis thaliana]
gi|7487246|pir||T00515 auxin-regulated protein GH3
homolog At2g23170 - Arabidopsis thaliana
gi|2642446|gb|AAB87114.1| unknown protein [Arabidopsis
thaliana] gi|19699328|gb|AAL91274.1| At2g23170/T20D16.20
[Arabidopsis thaliana] gi|23463057|gb|AAN33198.1|
At2g23170/T20D16.20 [Arabidopsis thaliana]
Length = 595
Score = 98.6 bits (244), Expect(2) = 3e-33
Identities = 49/56 (87%), Positives = 50/56 (88%)
Frame = -3
Query: 598 LVMEESLTTVYRHGRNADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKVPRC 431
L MEESL +VYR R AD SIGPLEIRVVKNGTFEELMDYAISRGASINQYKVPRC
Sbjct: 508 LEMEESLNSVYRQSRVADKSIGPLEIRVVKNGTFEELMDYAISRGASINQYKVPRC 563
Score = 65.5 bits (158), Expect(2) = 3e-33
Identities = 29/32 (90%), Positives = 31/32 (96%)
Frame = -1
Query: 429 VSFTPIMELLDSRVVSSHFSPAAPHWTPERRR 334
VSFTPIMELLDSRVVS+HFSPA PHW+PERRR
Sbjct: 564 VSFTPIMELLDSRVVSTHFSPALPHWSPERRR 595
>ref|NP_179101.1| putative auxin-regulated protein; protein id: At2g14960.1
[Arabidopsis thaliana] gi|25345301|pir||D84523 probable
auxin-regulated protein [imported] - Arabidopsis
thaliana gi|3650037|gb|AAC61292.1| putative
auxin-regulated protein [Arabidopsis thaliana]
Length = 590
Score = 99.0 bits (245), Expect(2) = 9e-33
Identities = 48/56 (85%), Positives = 51/56 (90%)
Frame = -3
Query: 598 LVMEESLTTVYRHGRNADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKVPRC 431
L MEESL +VYR R ADNS+GPLEIRVV+NGTFEELMDYAISRGASINQYKVPRC
Sbjct: 502 LGMEESLNSVYRQSRVADNSVGPLEIRVVRNGTFEELMDYAISRGASINQYKVPRC 557
Score = 63.2 bits (152), Expect(2) = 9e-33
Identities = 27/32 (84%), Positives = 31/32 (96%)
Frame = -1
Query: 429 VSFTPIMELLDSRVVSSHFSPAAPHWTPERRR 334
V+FTPI+ELLDSRVVS+HFSP+ PHWTPERRR
Sbjct: 558 VNFTPIVELLDSRVVSAHFSPSLPHWTPERRR 589
>ref|NP_195455.1| auxin-responsive GH3 - like protein; protein id: At4g37390.1,
supported by cDNA: gi_16648768 [Arabidopsis thaliana]
gi|7486506|pir||T04733 auxin-regulated protein GH3
homolog F6G17.40 - Arabidopsis thaliana
gi|4468805|emb|CAB38206.1| auxin-responsive GH3-like
protein [Arabidopsis thaliana]
gi|7270721|emb|CAB80404.1| auxin-responsive GH3-like
protein [Arabidopsis thaliana]
Length = 603
Score = 97.4 bits (241), Expect(2) = 1e-32
Identities = 48/56 (85%), Positives = 50/56 (88%)
Frame = -3
Query: 598 LVMEESLTTVYRHGRNADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKVPRC 431
L MEESL +VYR R AD SIGPLEIRVV+NGTFEELMDYAISRGASINQYKVPRC
Sbjct: 516 LEMEESLNSVYRQSRVADKSIGPLEIRVVRNGTFEELMDYAISRGASINQYKVPRC 571
Score = 64.3 bits (155), Expect(2) = 1e-32
Identities = 28/32 (87%), Positives = 31/32 (96%)
Frame = -1
Query: 429 VSFTPIMELLDSRVVSSHFSPAAPHWTPERRR 334
VSFTPIMELLDSRVVS+HFSP+ PHW+PERRR
Sbjct: 572 VSFTPIMELLDSRVVSAHFSPSLPHWSPERRR 603
>pir||T52435 GH3 homolog [imported] - Arabidopsis thaliana (fragment)
gi|6520208|dbj|BAA87950.1| GH3 homolog [Arabidopsis
thaliana]
Length = 323
Score = 97.4 bits (241), Expect(2) = 1e-32
Identities = 48/56 (85%), Positives = 50/56 (88%)
Frame = -3
Query: 598 LVMEESLTTVYRHGRNADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKVPRC 431
L MEESL +VYR R AD SIGPLEIRVV+NGTFEELMDYAISRGASINQYKVPRC
Sbjct: 236 LEMEESLNSVYRQSRVADKSIGPLEIRVVRNGTFEELMDYAISRGASINQYKVPRC 291
Score = 64.3 bits (155), Expect(2) = 1e-32
Identities = 28/32 (87%), Positives = 31/32 (96%)
Frame = -1
Query: 429 VSFTPIMELLDSRVVSSHFSPAAPHWTPERRR 334
VSFTPIMELLDSRVVS+HFSP+ PHW+PERRR
Sbjct: 292 VSFTPIMELLDSRVVSAHFSPSLPHWSPERRR 323
>pir||S17433 auxin-regulated protein GH3 - soybean gi|18591|emb|CAA42636.1|
auxin-responsive GH3 product [Glycine max]
Length = 593
Score = 99.8 bits (247), Expect(2) = 1e-31
Identities = 49/56 (87%), Positives = 51/56 (90%)
Frame = -3
Query: 598 LVMEESLTTVYRHGRNADNSIGPLEIRVVKNGTFEELMDYAISRGASINQYKVPRC 431
L MEESL VYR GR AD+SIGPLEIRVVKNGTFEELMDYAISRGASI+QYKVPRC
Sbjct: 506 LTMEESLNAVYRQGRVADHSIGPLEIRVVKNGTFEELMDYAISRGASISQYKVPRC 561
Score = 58.9 bits (141), Expect(2) = 1e-31
Identities = 26/32 (81%), Positives = 28/32 (87%)
Frame = -1
Query: 429 VSFTPIMELLDSRVVSSHFSPAAPHWTPERRR 334
V+FTPI ELLDSRV S HFSP+ PHWTPERRR
Sbjct: 562 VTFTPITELLDSRVESVHFSPSEPHWTPERRR 593
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 492,748,439
Number of Sequences: 1393205
Number of extensions: 10239799
Number of successful extensions: 33313
Number of sequences better than 10.0: 46
Number of HSP's better than 10.0 without gapping: 27792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30895
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
