Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000884A_C01 KMC000884A_c01
(643 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM13097.1| putative protein [Arabidopsis thaliana] gi|250835... 62 6e-09
ref|NP_201489.1| protein kinase, 41K (EC 2.7.1.-) (pir||S71172);... 62 6e-09
ref|NP_190619.1| protein kinase SPK-2; protein id: At3g50500.1, ... 62 8e-09
gb|AAM65501.1| protein kinase SPK-2 [Arabidopsis thaliana] 62 8e-09
gb|AAF27340.1|AF186020_1 abscisic acid-activated protein kinase ... 47 2e-04
>gb|AAM13097.1| putative protein [Arabidopsis thaliana] gi|25083584|gb|AAN72093.1|
putative protein [Arabidopsis thaliana]
Length = 349
Score = 62.0 bits (149), Expect = 6e-09
Identities = 27/36 (75%), Positives = 32/36 (88%)
Frame = -3
Query: 629 LDKFMMDNIDMDDDFDELDSESELDIDSSGEIVYAI 522
LD FM DN+D+DDD D+ DSESE+DIDSSGEIVYA+
Sbjct: 314 LDDFMTDNLDLDDDMDDFDSESEIDIDSSGEIVYAL 349
>ref|NP_201489.1| protein kinase, 41K (EC 2.7.1.-) (pir||S71172); protein id:
At5g66880.1, supported by cDNA: gi_166818 [Arabidopsis
thaliana] gi|2146746|pir||S71172 protein kinase, 41K (EC
2.7.1.-) - Arabidopsis thaliana gi|166819|gb|AAA32846.1|
protein kinase gi|9758138|dbj|BAB08630.1| protein
kinase, 41K (EC 2.7.1.-) [Arabidopsis thaliana]
Length = 361
Score = 62.0 bits (149), Expect = 6e-09
Identities = 27/36 (75%), Positives = 32/36 (88%)
Frame = -3
Query: 629 LDKFMMDNIDMDDDFDELDSESELDIDSSGEIVYAI 522
LD FM DN+D+DDD D+ DSESE+DIDSSGEIVYA+
Sbjct: 326 LDDFMTDNLDLDDDMDDFDSESEIDIDSSGEIVYAL 361
>ref|NP_190619.1| protein kinase SPK-2; protein id: At3g50500.1, supported by cDNA:
3988., supported by cDNA: gi_16209651, supported by
cDNA: gi_166816 [Arabidopsis thaliana]
gi|1362002|pir||S56718 protein kinase SPK-2 (EC 2.7.1.-)
- Arabidopsis thaliana gi|166817|gb|AAA32845.1| protein
kinase gi|6561990|emb|CAB62479.1| protein kinase SPK-2
[Arabidopsis thaliana]
Length = 362
Score = 61.6 bits (148), Expect = 8e-09
Identities = 26/36 (72%), Positives = 32/36 (88%)
Frame = -3
Query: 629 LDKFMMDNIDMDDDFDELDSESELDIDSSGEIVYAI 522
LD FM DN+D+DDD D+ DSESE+D+DSSGEIVYA+
Sbjct: 327 LDDFMADNLDLDDDMDDFDSESEIDVDSSGEIVYAL 362
>gb|AAM65501.1| protein kinase SPK-2 [Arabidopsis thaliana]
Length = 362
Score = 61.6 bits (148), Expect = 8e-09
Identities = 26/36 (72%), Positives = 32/36 (88%)
Frame = -3
Query: 629 LDKFMMDNIDMDDDFDELDSESELDIDSSGEIVYAI 522
LD FM DN+D+DDD D+ DSESE+D+DSSGEIVYA+
Sbjct: 327 LDDFMADNLDLDDDMDDFDSESEIDVDSSGEIVYAL 362
>gb|AAF27340.1|AF186020_1 abscisic acid-activated protein kinase [Vicia faba]
Length = 349
Score = 47.4 bits (111), Expect = 2e-04
Identities = 23/40 (57%), Positives = 31/40 (77%)
Frame = -3
Query: 641 GACSLDKFMMDNIDMDDDFDELDSESELDIDSSGEIVYAI 522
G+ D+F I++D+D DE+DS+ ELD+DSSGEIVYAI
Sbjct: 314 GSYYFDEF----IEVDEDMDEIDSDYELDVDSSGEIVYAI 349
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 562,437,548
Number of Sequences: 1393205
Number of extensions: 12246064
Number of successful extensions: 36746
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 29303
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33757
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27007650415
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
