Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000876A_C01 KMC000876A_c01
(665 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|O81645|VIL3_ARATH Villin 3 gi|11358922|pir||T50668 villin 3 [... 59 1e-13
ref|NP_567048.1| villin 3 fragment; protein id: At3g57410.1, sup... 59 1e-13
pir||T45819 villin 3 homolog F28O9.260 - Arabidopsis thaliana (f... 59 1e-13
ref|NP_194745.1| putative villin; protein id: At4g30160.1 [Arabi... 54 2e-08
pir||E84845 probable villin 2 [imported] - Arabidopsis thaliana 60 3e-08
>sp|O81645|VIL3_ARATH Villin 3 gi|11358922|pir||T50668 villin 3 [imported] - Arabidopsis
thaliana gi|3415117|gb|AAC31607.1| villin 3 [Arabidopsis
thaliana]
Length = 966
Score = 59.3 bits (142), Expect(2) = 1e-13
Identities = 28/54 (51%), Positives = 39/54 (71%)
Frame = -1
Query: 659 DGDDSQSSQGPFTYDQLKTTSGKNVPGIDLKRREAYLSDEEFETVIGMVKDAFY 498
D + +++ FTY++L+ S K V GID KRREAYLS+ EF+TV GM K++FY
Sbjct: 896 DDSEVETTGVTFTYERLQAKSEKPVTGIDFKRREAYLSEVEFKTVFGMEKESFY 949
Score = 38.5 bits (88), Expect(2) = 1e-13
Identities = 17/22 (77%), Positives = 17/22 (77%)
Frame = -2
Query: 511 KMHFTKLPNWKQDLLKKKFELF 446
K F KLP WKQDLLKKKF LF
Sbjct: 945 KESFYKLPGWKQDLLKKKFNLF 966
>ref|NP_567048.1| villin 3 fragment; protein id: At3g57410.1, supported by cDNA:
gi_3415116 [Arabidopsis thaliana]
Length = 965
Score = 59.3 bits (142), Expect(2) = 1e-13
Identities = 28/54 (51%), Positives = 39/54 (71%)
Frame = -1
Query: 659 DGDDSQSSQGPFTYDQLKTTSGKNVPGIDLKRREAYLSDEEFETVIGMVKDAFY 498
D + +++ FTY++L+ S K V GID KRREAYLS+ EF+TV GM K++FY
Sbjct: 895 DDSEVETTGVTFTYERLQAKSEKPVTGIDFKRREAYLSEVEFKTVFGMEKESFY 948
Score = 38.5 bits (88), Expect(2) = 1e-13
Identities = 17/22 (77%), Positives = 17/22 (77%)
Frame = -2
Query: 511 KMHFTKLPNWKQDLLKKKFELF 446
K F KLP WKQDLLKKKF LF
Sbjct: 944 KESFYKLPGWKQDLLKKKFNLF 965
>pir||T45819 villin 3 homolog F28O9.260 - Arabidopsis thaliana (fragment)
gi|6735320|emb|CAB68147.1| villin 3 fragment
[Arabidopsis thaliana]
Length = 383
Score = 59.3 bits (142), Expect(2) = 1e-13
Identities = 28/54 (51%), Positives = 39/54 (71%)
Frame = -1
Query: 659 DGDDSQSSQGPFTYDQLKTTSGKNVPGIDLKRREAYLSDEEFETVIGMVKDAFY 498
D + +++ FTY++L+ S K V GID KRREAYLS+ EF+TV GM K++FY
Sbjct: 313 DDSEVETTGVTFTYERLQAKSEKPVTGIDFKRREAYLSEVEFKTVFGMEKESFY 366
Score = 38.5 bits (88), Expect(2) = 1e-13
Identities = 17/22 (77%), Positives = 17/22 (77%)
Frame = -2
Query: 511 KMHFTKLPNWKQDLLKKKFELF 446
K F KLP WKQDLLKKKF LF
Sbjct: 362 KESFYKLPGWKQDLLKKKFNLF 383
>ref|NP_194745.1| putative villin; protein id: At4g30160.1 [Arabidopsis thaliana]
gi|25091517|sp|O65570|VIL4_ARATH Villin 4
gi|7488222|pir||T14076 probable villin [imported] -
Arabidopsis thaliana gi|3093294|emb|CAA73320.1| putative
villin [Arabidopsis thaliana] gi|5730126|emb|CAB52460.1|
putative villin [Arabidopsis thaliana]
gi|7269916|emb|CAB81009.1| putative villin [Arabidopsis
thaliana] gi|26449688|dbj|BAC41968.1| putative villin
[Arabidopsis thaliana] gi|29029072|gb|AAO64915.1|
At4g30160 [Arabidopsis thaliana]
Length = 974
Score = 54.3 bits (129), Expect(2) = 2e-08
Identities = 27/54 (50%), Positives = 34/54 (62%)
Frame = -1
Query: 659 DGDDSQSSQGPFTYDQLKTTSGKNVPGIDLKRREAYLSDEEFETVIGMVKDAFY 498
+G + + YD+LKTTS V ID+ RREAYLS EEF+ GM K+AFY
Sbjct: 904 EGVEDEEDLPAHPYDRLKTTSTDPVSDIDVTRREAYLSSEEFKEKFGMTKEAFY 957
Score = 25.8 bits (55), Expect(2) = 2e-08
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 511 KMHFTKLPNWKQDLLKKKFELF 446
K F KLP WKQ+ K +LF
Sbjct: 953 KEAFYKLPKWKQNKFKMAVQLF 974
>pir||E84845 probable villin 2 [imported] - Arabidopsis thaliana
Length = 955
Score = 59.7 bits (143), Expect = 3e-08
Identities = 32/69 (46%), Positives = 45/69 (64%), Gaps = 1/69 (1%)
Frame = -1
Query: 662 DDGDDS-QSSQGPFTYDQLKTTSGKNVPGIDLKRREAYLSDEEFETVIGMVKDAFY*VAQ 486
+ GD Q S FTY+QL+ S V GID KRREAYLS+EEF++V G+ K+AF + +
Sbjct: 883 EQGDSEIQPSGATFTYEQLRAKSENPVTGIDFKRREAYLSEEEFQSVFGIEKEAFNNLPR 942
Query: 485 LEARLAEKE 459
+ L +K+
Sbjct: 943 WKQDLLKKK 951
Score = 37.7 bits (86), Expect = 0.14
Identities = 16/22 (72%), Positives = 17/22 (76%)
Frame = -2
Query: 511 KMHFTKLPNWKQDLLKKKFELF 446
K F LP WKQDLLKKKF+LF
Sbjct: 934 KEAFNNLPRWKQDLLKKKFDLF 955
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 545,373,981
Number of Sequences: 1393205
Number of extensions: 11456696
Number of successful extensions: 30613
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 29584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30582
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28855580904
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
