Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000867A_C01 KMC000867A_c01
(1108 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB02586.1| gene_id:MUO10.13~unknown protein [Arabidopsis th... 72 1e-11
ref|NP_566850.2| hypothetical protein; protein id: At3g29390.1, ... 72 1e-11
gb|AAM63659.1| unknown [Arabidopsis thaliana] 72 2e-11
ref|NP_499617.1| Putative protein, nematode specific [Caenorhabd... 53 7e-06
emb|CAB11562.2| Hypothetical protein Y49E10.10 [Caenorhabditis e... 53 7e-06
>dbj|BAB02586.1| gene_id:MUO10.13~unknown protein [Arabidopsis thaliana]
Length = 129
Score = 72.4 bits (176), Expect = 1e-11
Identities = 44/105 (41%), Positives = 60/105 (56%), Gaps = 18/105 (17%)
Frame = -3
Query: 770 PAPRKLMQ-----------SNGMAPPPPRTMPPPPPTLRTMPPP------PPPPKFS-DA 645
P+PR +M S M+PP ++M PPPP +TM P PPPP+F+
Sbjct: 24 PSPRSVMPPPPPKTIAPPPSKTMSPPSSKSMLPPPPRSKTMSPLSSKSMLPPPPRFTLTT 83
Query: 644 PEVKVQDKSKNLLKTKSDAVPDTLIKLMEYGEDDDDVDDSSEEPL 510
++QD ++ K + VPDTLIKLMEYG+D+DD DD +EPL
Sbjct: 84 QRSRLQDN--HISVKKPNPVPDTLIKLMEYGDDEDD-DDDPDEPL 125
>ref|NP_566850.2| hypothetical protein; protein id: At3g29390.1, supported by cDNA:
gi_17473752 [Arabidopsis thaliana]
gi|17473753|gb|AAL38317.1| unknown protein [Arabidopsis
thaliana] gi|20148525|gb|AAM10153.1| unknown protein
[Arabidopsis thaliana]
Length = 302
Score = 72.4 bits (176), Expect = 1e-11
Identities = 44/105 (41%), Positives = 60/105 (56%), Gaps = 18/105 (17%)
Frame = -3
Query: 770 PAPRKLMQ-----------SNGMAPPPPRTMPPPPPTLRTMPPP------PPPPKFS-DA 645
P+PR +M S M+PP ++M PPPP +TM P PPPP+F+
Sbjct: 197 PSPRSVMPPPPPKTIAPPPSKTMSPPSSKSMLPPPPRSKTMSPLSSKSMLPPPPRFTLTT 256
Query: 644 PEVKVQDKSKNLLKTKSDAVPDTLIKLMEYGEDDDDVDDSSEEPL 510
++QD ++ K + VPDTLIKLMEYG+D+DD DD +EPL
Sbjct: 257 QRSRLQDN--HISVKKPNPVPDTLIKLMEYGDDEDD-DDDPDEPL 298
>gb|AAM63659.1| unknown [Arabidopsis thaliana]
Length = 152
Score = 72.0 bits (175), Expect = 2e-11
Identities = 42/90 (46%), Positives = 54/90 (59%), Gaps = 3/90 (3%)
Frame = -3
Query: 770 PAPRKLMQ---SNGMAPPPPRTMPPPPPTLRTMPPPPPPPKFSDAPEVKVQDKSKNLLKT 600
P P K M S M PPPPR+ P T ++M PPPP + P ++QD ++
Sbjct: 63 PPPSKTMSPPSSKSMLPPPPRSKTMSPLTSKSMLPPPPRFTLTTQPS-RLQDN--HISVK 119
Query: 599 KSDAVPDTLIKLMEYGEDDDDVDDSSEEPL 510
K + VPDTLIKLMEYG+D+DD DD +EPL
Sbjct: 120 KPNPVPDTLIKLMEYGDDEDD-DDDPDEPL 148
>ref|NP_499617.1| Putative protein, nematode specific [Caenorhabditis elegans]
gi|7510032|pir||T27051 hypothetical protein Y49E10.10 -
Caenorhabditis elegans
Length = 476
Score = 53.1 bits (126), Expect = 7e-06
Identities = 31/93 (33%), Positives = 43/93 (45%), Gaps = 14/93 (15%)
Frame = -3
Query: 857 PTLTQLQGLEPLRPNEQSDDLVLRNTSNMPAPRKLM-----------QSNGMAPPPPRTM 711
P+ T+ QG +P +P Q+ D N++ PA + + APPPP T
Sbjct: 173 PSKTKPQGGDPAKPKPQTGDPYATNSTVKPATAPVTPEPTVKNTTAAEPTTEAPPPPTTK 232
Query: 710 PPPPPTLRTMPPP---PPPPKFSDAPEVKVQDK 621
PPPPT + PPP PPP + AP +K
Sbjct: 233 APPPPTTKAPPPPTTKAPPPPTTKAPPPPTTNK 265
Score = 35.8 bits (81), Expect = 1.2
Identities = 29/108 (26%), Positives = 40/108 (36%), Gaps = 8/108 (7%)
Frame = -3
Query: 776 NMPAPRKLMQSNGMAPPPPRTMPPPPPTLRTMPPPPPPPKFSDAPEVKVQDKSKNLLKTK 597
N PAP P P P P +P PPPPP + E K T
Sbjct: 285 NPPAPENTTAKVETTKPTKAAPPAPTPVPNPVPSPPPPPANTTVTEEKT---------TV 335
Query: 596 SDAVPDTLIKLMEYGEDDDDVDDSSEE-----PLP---RTTQANGVQK 477
A + K + E+ +D+S+ + P+P TT+A G K
Sbjct: 336 PPATDEPAPKTVATTENPKPIDNSTPQKPPNPPVPIVENTTKAPGTGK 383
Score = 33.1 bits (74), Expect = 8.0
Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 20/107 (18%)
Frame = -3
Query: 734 APPPPRT-MPPPPPTLRTM----PPPPPPPKFSDAPEVKVQDKSKNLLKT--KSDAVPDT 576
APPPP T PPPP T + + P P P P + AP + + ++T + A P
Sbjct: 249 APPPPTTKAPPPPTTNKEVTTVAPVPKPAPVTAPAPNPPAPENTTAKVETTKPTKAAPPA 308
Query: 575 LIKL-------------MEYGEDDDDVDDSSEEPLPRTTQANGVQKP 474
+ E+ V +++EP P+T KP
Sbjct: 309 PTPVPNPVPSPPPPPANTTVTEEKTTVPPATDEPAPKTVATTENPKP 355
>emb|CAB11562.2| Hypothetical protein Y49E10.10 [Caenorhabditis elegans]
Length = 425
Score = 53.1 bits (126), Expect = 7e-06
Identities = 31/93 (33%), Positives = 43/93 (45%), Gaps = 14/93 (15%)
Frame = -3
Query: 857 PTLTQLQGLEPLRPNEQSDDLVLRNTSNMPAPRKLM-----------QSNGMAPPPPRTM 711
P+ T+ QG +P +P Q+ D N++ PA + + APPPP T
Sbjct: 122 PSKTKPQGGDPAKPKPQTGDPYATNSTVKPATAPVTPEPTVKNTTAAEPTTEAPPPPTTK 181
Query: 710 PPPPPTLRTMPPP---PPPPKFSDAPEVKVQDK 621
PPPPT + PPP PPP + AP +K
Sbjct: 182 APPPPTTKAPPPPTTKAPPPPTTKAPPPPTTNK 214
Score = 35.8 bits (81), Expect = 1.2
Identities = 29/108 (26%), Positives = 40/108 (36%), Gaps = 8/108 (7%)
Frame = -3
Query: 776 NMPAPRKLMQSNGMAPPPPRTMPPPPPTLRTMPPPPPPPKFSDAPEVKVQDKSKNLLKTK 597
N PAP P P P P +P PPPPP + E K T
Sbjct: 234 NPPAPENTTAKVETTKPTKAAPPAPTPVPNPVPSPPPPPANTTVTEEKT---------TV 284
Query: 596 SDAVPDTLIKLMEYGEDDDDVDDSSEE-----PLP---RTTQANGVQK 477
A + K + E+ +D+S+ + P+P TT+A G K
Sbjct: 285 PPATDEPAPKTVATTENPKPIDNSTPQKPPNPPVPIVENTTKAPGTGK 332
Score = 33.1 bits (74), Expect = 8.0
Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 20/107 (18%)
Frame = -3
Query: 734 APPPPRT-MPPPPPTLRTM----PPPPPPPKFSDAPEVKVQDKSKNLLKT--KSDAVPDT 576
APPPP T PPPP T + + P P P P + AP + + ++T + A P
Sbjct: 198 APPPPTTKAPPPPTTNKEVTTVAPVPKPAPVTAPAPNPPAPENTTAKVETTKPTKAAPPA 257
Query: 575 LIKL-------------MEYGEDDDDVDDSSEEPLPRTTQANGVQKP 474
+ E+ V +++EP P+T KP
Sbjct: 258 PTPVPNPVPSPPPPPANTTVTEEKTTVPPATDEPAPKTVATTENPKP 304
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 966,166,784
Number of Sequences: 1393205
Number of extensions: 24265079
Number of successful extensions: 388835
Number of sequences better than 10.0: 3289
Number of HSP's better than 10.0 without gapping: 119469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 248715
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 66712885146
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
