Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000866A_C01 KMC000866A_c01
(663 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD55964.1|AF084912_1 cytochrome b [Bombus flavifrons] 38 0.14
gb|AAC99657.1| cytochrome b [Bombus pascuorum] 37 0.18
gb|AAD55962.1|AF084910_1 cytochrome b [Bombus bifarius] 37 0.24
gb|AAB82792.1| cytochrome b [Bombus pascuorum] 37 0.31
gb|AAB82787.1| cytochrome b [Bombus pascuorum] gi|2586341|gb|AAB... 37 0.31
>gb|AAD55964.1|AF084912_1 cytochrome b [Bombus flavifrons]
Length = 194
Score = 37.7 bits (86), Expect = 0.14
Identities = 29/112 (25%), Positives = 50/112 (43%)
Frame = -1
Query: 336 WDLMETWSGILGWKSTTLGWIFNGQFGWTLEWIFGAYK*LIFVSNKHIIFSFILNQLLSL 157
W M W G + + + GQF T+EWI+G + N+ F FIL ++ +
Sbjct: 53 WGQMSFW-GAMVITNLISAIPYIGQF--TVEWIWGGFSINNDTLNRFYSFHFILPFIILM 109
Query: 156 FVPYYVYVLRTLKS*DGSHEELNFID*SAVFRFHHHFEIVNVQFKFISFAIF 1
V ++ +L S + H +LN FH +F I ++ ++F +F
Sbjct: 110 MVMMHLIILHLTGSSNPIHSKLNIYK----INFHPYFSIKDLITIILTFTLF 157
>gb|AAC99657.1| cytochrome b [Bombus pascuorum]
Length = 195
Score = 37.4 bits (85), Expect = 0.18
Identities = 28/112 (25%), Positives = 51/112 (45%)
Frame = -1
Query: 336 WDLMETWSGILGWKSTTLGWIFNGQFGWTLEWIFGAYK*LIFVSNKHIIFSFILNQLLSL 157
W M W G + + + GQF T+EWI+G + N+ F FIL ++ +
Sbjct: 53 WGQMSFW-GAMVITNLISALPYIGQF--TVEWIWGGFSINNDTLNRFYSFHFILPFIILM 109
Query: 156 FVPYYVYVLRTLKS*DGSHEELNFID*SAVFRFHHHFEIVNVQFKFISFAIF 1
V ++ +L S + H ++N FH +F I ++ ++F++F
Sbjct: 110 LVFIHLMILHITGSSNPMHSKMNIYK----INFHPYFTIKDLITMILTFSMF 157
>gb|AAD55962.1|AF084910_1 cytochrome b [Bombus bifarius]
Length = 195
Score = 37.0 bits (84), Expect = 0.24
Identities = 30/112 (26%), Positives = 49/112 (42%)
Frame = -1
Query: 336 WDLMETWSGILGWKSTTLGWIFNGQFGWTLEWIFGAYK*LIFVSNKHIIFSFILNQLLSL 157
W M W G + + + GQF T+EWI+G + N+ F FIL L+ +
Sbjct: 53 WGQMSFW-GAMVITNLISAIPYIGQF--TVEWIWGGFSINNDTLNRFYSFHFILPFLILM 109
Query: 156 FVPYYVYVLRTLKS*DGSHEELNFID*SAVFRFHHHFEIVNVQFKFISFAIF 1
V ++ +L S + H +LN FH +F I ++ + F +F
Sbjct: 110 MVFMHLIILHITGSSNPIHSKLNIYK----INFHPYFSIKDLITMMLIFMLF 157
>gb|AAB82792.1| cytochrome b [Bombus pascuorum]
Length = 133
Score = 36.6 bits (83), Expect = 0.31
Identities = 24/89 (26%), Positives = 44/89 (48%)
Frame = -1
Query: 267 GQFGWTLEWIFGAYK*LIFVSNKHIIFSFILNQLLSLFVPYYVYVLRTLKS*DGSHEELN 88
GQF T+EWI+G + N+ F FIL ++ + V ++ +L S + H ++N
Sbjct: 14 GQF--TVEWIWGGFSINNDTLNRFYSFHFILPFIILMLVFIHLMILHITGSSNPMHSKMN 71
Query: 87 FID*SAVFRFHHHFEIVNVQFKFISFAIF 1
FH +F I ++ ++F++F
Sbjct: 72 IYK----INFHPYFTIKDLITMILTFSMF 96
>gb|AAB82787.1| cytochrome b [Bombus pascuorum] gi|2586341|gb|AAB82790.1|
cytochrome b [Bombus pascuorum]
Length = 133
Score = 36.6 bits (83), Expect = 0.31
Identities = 24/89 (26%), Positives = 44/89 (48%)
Frame = -1
Query: 267 GQFGWTLEWIFGAYK*LIFVSNKHIIFSFILNQLLSLFVPYYVYVLRTLKS*DGSHEELN 88
GQF T+EWI+G + N+ F FIL ++ + V ++ +L S + H ++N
Sbjct: 14 GQF--TVEWIWGGFSINNDTLNRFYSFHFILPFIILMLVFIHLMILHITGSSNPMHSKMN 71
Query: 87 FID*SAVFRFHHHFEIVNVQFKFISFAIF 1
FH +F I ++ ++F++F
Sbjct: 72 IYK----INFHPYFTIKDLITMILTFSMF 96
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 577,836,004
Number of Sequences: 1393205
Number of extensions: 12913235
Number of successful extensions: 28330
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 27304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28316
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28572683052
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
