Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000864A_C01 KMC000864A_c01
(842 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||B86315 F2H15.20 protein - Arabidopsis thaliana gi|9665075|g... 39 0.13
ref|NP_173240.1| nuclear poly(A) polymerase, putative; protein i... 39 0.13
ref|NP_741848.1| Calcium Channel, Alpha subunit CCA-1 (210.2 kD)... 37 0.48
gb|EAA17046.1| hypothetical protein [Plasmodium yoelii yoelii] 36 0.62
gb|EAA01186.1| agCP12585 [Anopheles gambiae str. PEST] 35 1.4
>pir||B86315 F2H15.20 protein - Arabidopsis thaliana
gi|9665075|gb|AAF97277.1|AC034106_20 Strong similarity
to nuclear poly(A) polymerase from Arabidopsis thaliana
gb|AF255297 and contains a Nucleotidyltransferase
PF|01909 domain. ESTs gb|AV536592, gb|AV553256,
gb|AV561630, gb|AV532289 come from this gene
gi|29029092|gb|AAO64925.1| At1g17980 [Arabidopsis
thaliana]
Length = 713
Score = 38.5 bits (88), Expect = 0.13
Identities = 47/169 (27%), Positives = 68/169 (39%), Gaps = 11/169 (6%)
Frame = -2
Query: 703 SEKPSGKSIGEIPSGDSETNGL---VTGNQQENPILTAPDTSNSKEEEKLAIEKIMSGPY 533
S PS SI P D TNG ++ + EN + + D S EK+A +
Sbjct: 570 SPNPSVGSICSSPMKDYCTNGKSEPISKDPPENVVAFSKDPPESLPIEKIATPQAH---- 625
Query: 532 DGRQALAEPDELEDDNMYPNQVKDHAGDMKSSTCDSLNSKSEVAEEPVISKGTTCSPYLC 353
E +ELE+ + NQV + + V+S T P+
Sbjct: 626 -------ETEELEESFDFGNQVIEQISHKVA----------------VLSATATIPPFEA 662
Query: 352 SNGG-------LEELEPAELSAPLLSGVITP-VPQRKPLIRLNFTSLGQ 230
++ G +EELE P P V QRKP+I+L+FTSLG+
Sbjct: 663 TSNGSPFPYEAVEELEVLPTRQP--DAAHRPSVQQRKPIIKLSFTSLGK 709
>ref|NP_173240.1| nuclear poly(A) polymerase, putative; protein id: At1g17980.1
[Arabidopsis thaliana]
Length = 714
Score = 38.5 bits (88), Expect = 0.13
Identities = 47/169 (27%), Positives = 68/169 (39%), Gaps = 11/169 (6%)
Frame = -2
Query: 703 SEKPSGKSIGEIPSGDSETNGL---VTGNQQENPILTAPDTSNSKEEEKLAIEKIMSGPY 533
S PS SI P D TNG ++ + EN + + D S EK+A +
Sbjct: 571 SPNPSVGSICSSPMKDYCTNGKSEPISKDPPENVVAFSKDPPESLPIEKIATPQAH---- 626
Query: 532 DGRQALAEPDELEDDNMYPNQVKDHAGDMKSSTCDSLNSKSEVAEEPVISKGTTCSPYLC 353
E +ELE+ + NQV + + V+S T P+
Sbjct: 627 -------ETEELEESFDFGNQVIEQISHKVA----------------VLSATATIPPFEA 663
Query: 352 SNGG-------LEELEPAELSAPLLSGVITP-VPQRKPLIRLNFTSLGQ 230
++ G +EELE P P V QRKP+I+L+FTSLG+
Sbjct: 664 TSNGSPFPYEAVEELEVLPTRQP--DAAHRPSVQQRKPIIKLSFTSLGK 710
>ref|NP_741848.1| Calcium Channel, Alpha subunit CCA-1 (210.2 kD) (cca-1)
[Caenorhabditis elegans]
gi|14039927|gb|AAK53427.1|AF368920_1 voltage-dependent
calcium channel alpha13 subunit [Caenorhabditis elegans]
gi|21392681|gb|AAM51534.1|U37548_4 Calcium channel, alpha
subunit protein 1, isoform a [Caenorhabditis elegans]
Length = 1837
Score = 36.6 bits (83), Expect = 0.48
Identities = 33/124 (26%), Positives = 48/124 (38%)
Frame = -2
Query: 685 KSIGEIPSGDSETNGLVTGNQQENPILTAPDTSNSKEEEKLAIEKIMSGPYDGRQALAEP 506
K + E D+E TG EN I + D +E E LAIE + G D
Sbjct: 1687 KHLEESNKRDAEGPAEPTGENIENEITKSDDDEIVEEHEPLAIEHVKEGELD-------- 1738
Query: 505 DELEDDNMYPNQVKDHAGDMKSSTCDSLNSKSEVAEEPVISKGTTCSPYLCSNGGLEELE 326
+E E + Q+ D G +K + L + E + + S C G L+ L
Sbjct: 1739 EEEETEEGPTTQIPDGHGGIKRLSMQVLEQELIEVERHLEERYRRASE--CLGGELQPLN 1796
Query: 325 PAEL 314
P E+
Sbjct: 1797 PGEI 1800
>gb|EAA17046.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 617
Score = 36.2 bits (82), Expect = 0.62
Identities = 34/134 (25%), Positives = 61/134 (45%), Gaps = 2/134 (1%)
Frame = -2
Query: 700 EKPSGKSIGEIPSGDSETNGLVTGNQQENPILTAPDTSNSKE--EEKLAIEKIMSGPYDG 527
E P+GK E P+G +NG + N QE+P + SN E ++K + + G +DG
Sbjct: 346 ESPTGK---ESPTGQESSNGQESPNGQESPDNGKINQSNELETNQDKTQMSQSPKGNHDG 402
Query: 526 RQALAEPDELEDDNMYPNQVKDHAGDMKSSTCDSLNSKSEVAEEPVISKGTTCSPYLCSN 347
L+ +E E ++ ++++ + SS D E P+ +T + Y +
Sbjct: 403 FD-LSTLEEYE--KLFKTYIEEYKNSVTSSLKDIQEHLYEDIWLPLYETYSTYADYYKNF 459
Query: 346 GGLEELEPAELSAP 305
+E L+ E + P
Sbjct: 460 NIMEYLKEMEANGP 473
>gb|EAA01186.1| agCP12585 [Anopheles gambiae str. PEST]
Length = 404
Score = 35.0 bits (79), Expect = 1.4
Identities = 27/105 (25%), Positives = 41/105 (38%), Gaps = 12/105 (11%)
Frame = -2
Query: 742 LMTQKSADIGAPKSEKPSGKS------IGEIPSGDSETNGLVTGNQQENPILTAPDTSNS 581
L+ +K A +G P + +G+S +G++ G + G Q P++ +S+
Sbjct: 30 LLVKKGAGVGGPAANTAAGRSNNAAKMVGKVAEGGGQHMGGFKAPQLPAPVVRPAASSSK 89
Query: 580 KEEEKLAIEKIMSGPYDGRQALAEPDELE------DDNMYPNQVK 464
EK K S P D A PD E D N Q K
Sbjct: 90 PVPEKQITPKTESEPMDTTPADDRPDAAEQKQSGTDGNQQAQQAK 134
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 717,072,641
Number of Sequences: 1393205
Number of extensions: 15662630
Number of successful extensions: 40267
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 38203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40194
length of database: 448,689,247
effective HSP length: 122
effective length of database: 278,718,237
effective search space used: 44037481446
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
