Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000860A_C01 KMC000860A_c01
(574 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566008.1| expressed protein; protein id: At2g44090.1, sup... 125 3e-28
ref|NP_191550.1| putative protein; protein id: At3g59910.1, supp... 121 5e-27
gb|AAK82517.1| At2g44090/F6E13.22 [Arabidopsis thaliana] 121 7e-27
sp|P13628|PHFS_DESVO Periplasmic [Fe] hydrogenase small subunit ... 32 7.4
gb|EAA07278.1| agCP10199 [Anopheles gambiae str. PEST] 32 7.4
>ref|NP_566008.1| expressed protein; protein id: At2g44090.1, supported by cDNA:
gi_15081724 [Arabidopsis thaliana]
gi|7452452|pir||T00689 hypothetical protein At2g44090
[imported] - Arabidopsis thaliana
gi|3212865|gb|AAC23416.1| expressed protein [Arabidopsis
thaliana] gi|22655026|gb|AAM98104.1| At2g44090/F6E13.22
[Arabidopsis thaliana]
Length = 582
Score = 125 bits (315), Expect = 3e-28
Identities = 67/118 (56%), Positives = 87/118 (72%), Gaps = 3/118 (2%)
Frame = -3
Query: 572 VAPELKTFLRDHWSEGAYMEGLRLGPEHYMNLVRIIKWGESPICLRDLPAPLTVAIAYLP 393
V +LK+FL++ WSE A+ +GL+ E+YMN +R++K GES I L+DLPAPL VAIAY+P
Sbjct: 460 VPSDLKSFLQEQWSEAAFNQGLKESRENYMNFMRVLKLGESAISLKDLPAPLRVAIAYMP 519
Query: 392 LYRECVKAGGCLFSPRLRGQLVEAARRLG--DRVFDEVTHG-RELVVFLENHLPNFLL 228
LYRECV AGG L S +LRGQLVEAA +L D +EV G +L+ LE+HLP FL+
Sbjct: 520 LYRECVDAGGRLLSQKLRGQLVEAATQLEGFDVDTEEVKKGHHQLMTILEHHLPLFLV 577
>ref|NP_191550.1| putative protein; protein id: At3g59910.1, supported by cDNA:
gi_20466797 [Arabidopsis thaliana]
gi|11280527|pir||T47815 hypothetical protein F24G16.180
- Arabidopsis thaliana gi|7019685|emb|CAB75810.1|
putative protein [Arabidopsis thaliana]
gi|20466798|gb|AAM20716.1| putative protein [Arabidopsis
thaliana]
Length = 611
Score = 121 bits (304), Expect = 5e-27
Identities = 65/112 (58%), Positives = 83/112 (74%), Gaps = 2/112 (1%)
Frame = -3
Query: 572 VAPELKTFLRDHWSEGAYMEGLRLGPEHYMNLVRIIKWGESPICLRDLPAPLTVAIAYLP 393
V +LK+FL++HWSE A+ +G+R + +MN +R++K GES I LRDLPAPL VAIAY+P
Sbjct: 495 VPSDLKSFLQEHWSESAFEKGMRESHDDFMNFMRVLKKGESAISLRDLPAPLRVAIAYMP 554
Query: 392 LYRECVKAGGCLFSPRLRGQLVEAARRL-GDRV-FDEVTHGRELVVFLENHL 243
LYREC+KA G L S RLRGQLVEA R+L G V EV+ R L+ LE+HL
Sbjct: 555 LYRECMKADGRLLSQRLRGQLVEAVRQLQGCAVAVVEVSQTRNLMAVLEHHL 606
>gb|AAK82517.1| At2g44090/F6E13.22 [Arabidopsis thaliana]
Length = 582
Score = 121 bits (303), Expect = 7e-27
Identities = 65/118 (55%), Positives = 86/118 (72%), Gaps = 3/118 (2%)
Frame = -3
Query: 572 VAPELKTFLRDHWSEGAYMEGLRLGPEHYMNLVRIIKWGESPICLRDLPAPLTVAIAYLP 393
V +LK+FL++ WSE A+ +GL+ E+YMN +R++K GES I L+DLPAPL VAIAY+P
Sbjct: 460 VPSDLKSFLQEQWSEAAFNQGLKESRENYMNFMRVLKLGESAISLKDLPAPLRVAIAYMP 519
Query: 392 LYRECVKAGGCLFSPRLRGQLVEAARRLG--DRVFDEVTHG-RELVVFLENHLPNFLL 228
LYRECV AGG L S +LRGQLVEAA +L D +EV G +L+ L++ LP FL+
Sbjct: 520 LYRECVDAGGRLLSQKLRGQLVEAATQLEGFDVDTEEVKKGHHQLMTILDHDLPLFLV 577
>sp|P13628|PHFS_DESVO Periplasmic [Fe] hydrogenase small subunit precursor (Fe
hydrogenlyase small chain) gi|66326|pir||HQDVSV
hydrogenase (EC 1.18.99.1) (Fe) small chain precursor -
Desulfovibrio vulgaris subsp. oxamicus
gi|145100|gb|AAA23374.1| [Fe]-hydrogenase beta subunit
Length = 124
Score = 31.6 bits (70), Expect = 7.4
Identities = 14/32 (43%), Positives = 20/32 (61%)
Frame = -3
Query: 380 CVKAGGCLFSPRLRGQLVEAARRLGDRVFDEV 285
CV GG L S R+ G+ V AA++L D + D +
Sbjct: 16 CVVTGGALISIRMTGKAVAAAKQLKDYMMDRI 47
>gb|EAA07278.1| agCP10199 [Anopheles gambiae str. PEST]
Length = 172
Score = 31.6 bits (70), Expect = 7.4
Identities = 20/63 (31%), Positives = 28/63 (43%), Gaps = 3/63 (4%)
Frame = -3
Query: 500 GPEHYMNLVRIIKWGESPICLRDLPAPLTVAIAY---LPLYRECVKAGGCLFSPRLRGQL 330
GP Y+ E PICL D AP+ V + +EC+K G P + QL
Sbjct: 67 GPPRYVQFSD----SECPICLEDYSAPVIVNCGHSFCSVCIQECIKMAGLALCPICKEQL 122
Query: 329 VEA 321
V++
Sbjct: 123 VKS 125
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 517,987,158
Number of Sequences: 1393205
Number of extensions: 11512116
Number of successful extensions: 24073
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 23466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24071
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
