Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000852A_C01 KMC000852A_c01
(497 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172338.1| hypothetical protein; protein id: At1g08620.1 [... 33 1.4
pir||T00715 hypothetical protein F22O13.10 - Arabidopsis thaliana 33 1.4
gb|EAA06414.1| agCP13699 [Anopheles gambiae str. PEST] 32 3.9
dbj|BAB84772.1| NS2 [Influenza C virus (C/Yamagata/2/98)] gi|186... 31 6.7
ref|NP_326342.1| TRANSKETOLASE (TK) [Mycoplasma pulmonis] gi|252... 31 8.8
>ref|NP_172338.1| hypothetical protein; protein id: At1g08620.1 [Arabidopsis thaliana]
Length = 1183
Score = 33.5 bits (75), Expect = 1.4
Identities = 17/52 (32%), Positives = 31/52 (58%)
Frame = -2
Query: 475 APVEAAAVLRSLFQKAHAEELNSLYSILTDNKLAADRTLIAQLLNEEIHKSR 320
+P ++L+ LF+KA EEL+SL +L++ + ++ +L+ EEI R
Sbjct: 1136 SPTGINSILKVLFKKASMEELSSLQEVLSE----TNSDMVTELVKEEIQNRR 1183
>pir||T00715 hypothetical protein F22O13.10 - Arabidopsis thaliana
Length = 1196
Score = 33.5 bits (75), Expect = 1.4
Identities = 17/52 (32%), Positives = 31/52 (58%)
Frame = -2
Query: 475 APVEAAAVLRSLFQKAHAEELNSLYSILTDNKLAADRTLIAQLLNEEIHKSR 320
+P ++L+ LF+KA EEL+SL +L++ + ++ +L+ EEI R
Sbjct: 1149 SPTGINSILKVLFKKASMEELSSLQEVLSE----TNSDMVTELVKEEIQNRR 1196
>gb|EAA06414.1| agCP13699 [Anopheles gambiae str. PEST]
Length = 828
Score = 32.0 bits (71), Expect = 3.9
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 174 LYNLHSGENPKD*GCMKLHVQPLRNYNLHVKKRLGV 281
L+N H E+P + H + RN++LH+K+ LG+
Sbjct: 493 LFNEHLLEHPVECSACGRHFKQWRNFSLHIKRHLGI 528
>dbj|BAB84772.1| NS2 [Influenza C virus (C/Yamagata/2/98)]
gi|18656263|dbj|BAB84774.1| NS2 [Influenza C virus
(C/Yamagata/6/98)] gi|27531694|dbj|BAC54486.1|
nonstructural protein 2 [Influenza C virus
(C/Miyagi/4/98)]
Length = 182
Score = 31.2 bits (69), Expect = 6.7
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +2
Query: 197 KPQRLRLHEIACATSEKLQFTCKEKVRGMNN---FIQIINHLGLSGFVNLFIEKLCN 358
K Q L ++ C+ EKL + V G+ N I IINH + + L I+ LCN
Sbjct: 123 KHQILTRLKLICSRLEKLDHNLSKAVLGIQNSEDLILIINHRDVCKNIILMIKSLCN 179
>ref|NP_326342.1| TRANSKETOLASE (TK) [Mycoplasma pulmonis] gi|25286308|pir||G90575
transketolase (tk) [imported] - Mycoplasma pulmonis
(strain UAB CTIP) gi|14089925|emb|CAC13684.1|
TRANSKETOLASE (TK) [Mycoplasma pulmonis]
Length = 615
Score = 30.8 bits (68), Expect = 8.8
Identities = 21/68 (30%), Positives = 30/68 (43%), Gaps = 9/68 (13%)
Frame = -2
Query: 496 GNDQGLHAPVEAAAVLRSL-----FQKAHAEELNSLYSILTDNK----LAADRTLIAQLL 344
G D H P+E A+LRS+ F+ A E+ Y+ +N +A R I L
Sbjct: 439 GEDGPTHQPIEQLAMLRSIPNVAVFRPADQREMQGAYAFALNNNGPTVIATTRQNIVSLE 498
Query: 343 NEEIHKSR 320
N KS+
Sbjct: 499 NSSSQKSQ 506
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 394,571,549
Number of Sequences: 1393205
Number of extensions: 8132346
Number of successful extensions: 17504
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 17228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17498
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14783057727
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
