Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000847A_C02 KMC000847A_c02
(559 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA88690.1| retinoblastoma-related protein [Pisum sativum] 189 2e-47
gb|AAF34803.1|AF230739_1 retinoblastoma-like protein [Euphorbia ... 181 5e-45
gb|AAF61377.1|AF133675_1 retinoblastoma-related protein 1 [Popul... 171 4e-42
dbj|BAA76477.1| NtRb1 [Nicotiana tabacum] 169 3e-41
pir||T43054 retinoblastoma-related protein - red goosefoot gi|37... 156 2e-37
>dbj|BAA88690.1| retinoblastoma-related protein [Pisum sativum]
Length = 1026
Score = 189 bits (481), Expect = 2e-47
Identities = 101/111 (90%), Positives = 102/111 (90%), Gaps = 3/111 (2%)
Frame = -3
Query: 557 DMSPKKVSAAHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNHLN 378
DMSPKKVSA HNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINN LN
Sbjct: 917 DMSPKKVSATHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLN 976
Query: 377 GNRKVRGALNFDDAADVGLVSDSMVANSLNLQNGSSASST---LKSEQPDS 234
GNRKVRG LNFDD DVGLVSDSMVANSL LQNGSSASS+ LKSEQPDS
Sbjct: 977 GNRKVRGPLNFDD-VDVGLVSDSMVANSLYLQNGSSASSSGAPLKSEQPDS 1026
>gb|AAF34803.1|AF230739_1 retinoblastoma-like protein [Euphorbia esula]
Length = 801
Score = 181 bits (459), Expect = 5e-45
Identities = 95/111 (85%), Positives = 100/111 (89%), Gaps = 3/111 (2%)
Frame = -3
Query: 557 DMSPKKVSAAHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNHLN 378
DMSPKKVSA+HNVYVSPLR+SKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINN LN
Sbjct: 692 DMSPKKVSASHNVYVSPLRTSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLN 751
Query: 377 GNRKVRGALNFDDAADVGLVSDSMVANSLNLQNGSSASST---LKSEQPDS 234
NRKVRG LNFDD DVGLVSDSMVANSL LQNGS ASS+ +K EQPD+
Sbjct: 752 SNRKVRGTLNFDD-VDVGLVSDSMVANSLYLQNGSCASSSGALIKPEQPDT 801
>gb|AAF61377.1|AF133675_1 retinoblastoma-related protein 1 [Populus tremula x Populus
tremuloides]
Length = 1035
Score = 171 bits (434), Expect = 4e-42
Identities = 91/111 (81%), Positives = 97/111 (86%), Gaps = 3/111 (2%)
Frame = -3
Query: 557 DMSPKKVSAAHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNHLN 378
DMSPKKVS+ HNVYVSPLRSSKMDALIS+SSKSYYACVGESTHAYQSPSKDL AINN LN
Sbjct: 927 DMSPKKVSSVHNVYVSPLRSSKMDALISNSSKSYYACVGESTHAYQSPSKDLNAINNRLN 986
Query: 377 GNRKVRGALNFDDAADVGLVSDSMVANSLNLQNGSSASST---LKSEQPDS 234
GNRK RG LN D+ DVGLVSDSMVANSL LQNG+ AS++ LKSEQ DS
Sbjct: 987 GNRKARGTLNLDN--DVGLVSDSMVANSLGLQNGNCASTSGAALKSEQSDS 1035
>dbj|BAA76477.1| NtRb1 [Nicotiana tabacum]
Length = 961
Score = 169 bits (427), Expect = 3e-41
Identities = 88/110 (80%), Positives = 96/110 (87%), Gaps = 2/110 (1%)
Frame = -3
Query: 557 DMSPKKVSAAHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNHLN 378
DMSPKKVSA HNVYVSPLR+SKMDALISHSSKSYYACVGESTHAYQSPSKDL INN LN
Sbjct: 854 DMSPKKVSAVHNVYVSPLRASKMDALISHSSKSYYACVGESTHAYQSPSKDLDVINNRLN 913
Query: 377 GNRKVRGALNFDDAADVGLVSDSMVANSLNLQNGSSAS--STLKSEQPDS 234
GNRK+RGALNFD D GLVSDS+VANSL LQNG+ S + +K+EQP+S
Sbjct: 914 GNRKLRGALNFD--VDAGLVSDSIVANSLYLQNGNCRSPVAHVKTEQPES 961
>pir||T43054 retinoblastoma-related protein - red goosefoot
gi|3702121|emb|CAA09736.1| retinoblastoma-related protein
[Chenopodium rubrum]
Length = 1012
Score = 156 bits (394), Expect = 2e-37
Identities = 86/112 (76%), Positives = 95/112 (84%), Gaps = 4/112 (3%)
Frame = -3
Query: 557 DMSPKKVSAAHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNHLN 378
DMSPKKV A NVYVSPLRSSKMDALIS+SSKSYYACVGESTHA+QSPSKDLTAIN+ LN
Sbjct: 905 DMSPKKV--AKNVYVSPLRSSKMDALISNSSKSYYACVGESTHAFQSPSKDLTAINDRLN 962
Query: 377 GNRKVRGALNFDDAADVGLVSDSMVANSLNLQNGSSASST----LKSEQPDS 234
KVRGALNFD D GLVSDS+VANSL LQNG+ A+++ LK+EQPDS
Sbjct: 963 STSKVRGALNFD--TDAGLVSDSLVANSLYLQNGNCATTSSVGPLKTEQPDS 1012
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 465,367,701
Number of Sequences: 1393205
Number of extensions: 9708475
Number of successful extensions: 23221
Number of sequences better than 10.0: 47
Number of HSP's better than 10.0 without gapping: 21750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23186
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
