Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000844A_C01 KMC000844A_c01
(625 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_198117.1| PWWP domain protein; protein id: At5g27650.1 [A... 60 2e-08
ref|NP_187194.1| PWWP domain protein; protein id: At3g05430.1 [A... 56 4e-07
gb|AAF31357.1|AF173159_1 p8.4.1 variant erythrocyte surface anti... 36 0.36
ref|NP_667337.1| membrane-type frizzled-related protein; retinal... 36 0.47
ref|NP_728029.1| CG4829-PA [Drosophila melanogaster] gi|24642668... 34 1.8
>ref|NP_198117.1| PWWP domain protein; protein id: At5g27650.1 [Arabidopsis thaliana]
Length = 1063
Score = 60.5 bits (145), Expect = 2e-08
Identities = 40/101 (39%), Positives = 52/101 (50%), Gaps = 10/101 (9%)
Frame = -2
Query: 624 DFNSKNVQKVT--SQLPPPIIPLATKNPQHNMRNFELAMAPRN--------SPNFINTTT 475
+F SK Q V QLPP +P P + +L + P + S NF
Sbjct: 967 EFVSKKFQNVVHHQQLPPSTLPPILPLPPQYTKPQQLPIKPVDHVEPPMPPSRNFRGPIP 1026
Query: 474 TTSATATPVDISQQMITLLTRCSDVVTNLTGLLGYVPYHQL 352
SA DIS QM+ LL++C++VV N+TGLLGYVPYH L
Sbjct: 1027 AVSAG----DISHQMLNLLSKCNEVVANVTGLLGYVPYHPL 1063
>ref|NP_187194.1| PWWP domain protein; protein id: At3g05430.1 [Arabidopsis thaliana]
gi|7596768|gb|AAF64539.1| hypothetical protein
[Arabidopsis thaliana]
Length = 965
Score = 55.8 bits (133), Expect = 4e-07
Identities = 25/33 (75%), Positives = 28/33 (84%)
Frame = -2
Query: 450 VDISQQMITLLTRCSDVVTNLTGLLGYVPYHQL 352
VDIS QM+ LLTRC+D V N+TGLLGYVPYH L
Sbjct: 933 VDISLQMMELLTRCNDAVANVTGLLGYVPYHSL 965
>gb|AAF31357.1|AF173159_1 p8.4.1 variant erythrocyte surface antigen-1a [Babesia bovis]
Length = 678
Score = 36.2 bits (82), Expect = 0.36
Identities = 26/98 (26%), Positives = 44/98 (44%)
Frame = -2
Query: 483 TTTTTSATATPVDISQQMITLLTRCSDVVTNLTGLLGYVPYHQL*KKWRNTLSYTIQETF 304
+T+T ++A P S ++ LT+ ++ LTG L +S T T+
Sbjct: 424 STSTPYSSAAPQS-SNTSLSRLTKNCQYLSPLTGEL------------YTAVSATFGGTY 470
Query: 303 TSWILWMWKSKHWGQEQFRAWVLFEVFEVLECKNALSC 190
SW+L++ + WG E L E F+ +EC+ C
Sbjct: 471 LSWVLYLSDALQWGLES-----LSEAFQQIECRGCRDC 503
>ref|NP_667337.1| membrane-type frizzled-related protein; retinal degeneration 6 [Mus
musculus] gi|22023767|gb|AAM89216.1|AF469650_1
membrane-type frizzled-related protein [Mus musculus]
Length = 584
Score = 35.8 bits (81), Expect = 0.47
Identities = 23/85 (27%), Positives = 34/85 (39%)
Frame = -2
Query: 606 VQKVTSQLPPPIIPLATKNPQHNMRNFELAMAPRNSPNFINTTTTTSATATPVDISQQMI 427
V + +QL +P TKNP + + P +PN TTTTT+ T +
Sbjct: 85 VAVILAQLQATSLPRTTKNPLLTRGLTPMGVIPSTTPNTTTTTTTTTPARTGQQEAAMSP 144
Query: 426 TLLTRCSDVVTNLTGLLGYVPYHQL 352
T T C ++ +G Y L
Sbjct: 145 THQTTCGGLLPGPSGFFSSPNYPDL 169
>ref|NP_728029.1| CG4829-PA [Drosophila melanogaster] gi|24642668|ref|NP_728030.1|
CG4829-PB [Drosophila melanogaster]
gi|24642670|ref|NP_573170.2| CG4829-PC [Drosophila
melanogaster] gi|7293291|gb|AAF48672.1| CG4829-PA
[Drosophila melanogaster] gi|22832416|gb|AAN09426.1|
CG4829-PB [Drosophila melanogaster]
gi|22832417|gb|AAN09427.1| CG4829-PC [Drosophila
melanogaster]
Length = 777
Score = 33.9 bits (76), Expect = 1.8
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -2
Query: 510 PRNSPNFINTTTTTSATATPVDISQQMITLLTRCSDVVTNLT 385
P+++PN NTTT T+ TATP IS + S + T ++
Sbjct: 84 PKSTPNRNNTTTATTTTATPTTISTEATITTIAPSGLATTIS 125
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 550,850,462
Number of Sequences: 1393205
Number of extensions: 11957872
Number of successful extensions: 33979
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 32358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33734
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25301904073
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
