Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000840A_C01 KMC000840A_c01
(719 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO51593.1| similar to Plasmodium falciparum (isolate 3D7). H... 39 0.095
ref|NP_703931.1| c3h4-type ring finger protein, putative [Plasmo... 38 0.12
ref|NP_705510.1| hypothetical protein [Plasmodium falciparum 3D7... 37 0.21
ref|NP_705549.1| signal recognition particle receptor alpha subu... 37 0.21
ref|NP_702215.1| hypothetical protein [Plasmodium falciparum 3D7... 37 0.28
>gb|AAO51593.1| similar to Plasmodium falciparum (isolate 3D7). Hypothetical protein
[Dictyostelium discoideum]
Length = 1845
Score = 38.5 bits (88), Expect = 0.095
Identities = 30/103 (29%), Positives = 50/103 (48%), Gaps = 7/103 (6%)
Frame = -2
Query: 667 KRMTRRF------PLFGQSENSTSSVQNIAP-SLDSIKLDTDSDASDNEKKVCASDSEKI 509
KR+ RRF PLF ++ ST + A SI+ DT S + K SE++
Sbjct: 903 KRLIRRFHGTSRNPLFHKNLESTLKLLKRAKFDWASIEFDTKSYLMNCNCKTVCHKSERM 962
Query: 508 DCSPNPDSETDIIDHDENNLGKRNDIIDHDENNQGKRNANEDS 380
+P + +++ NN N+II+++ NN K N N+++
Sbjct: 963 KDNPT----NKLQNNNRNNNNNNNNIINNNNNNNNKNNNNKNN 1001
Score = 32.3 bits (72), Expect = 6.8
Identities = 25/88 (28%), Positives = 45/88 (50%)
Frame = -2
Query: 634 QSENSTSSVQNIAPSLDSIKLDTDSDASDNEKKVCASDSEKIDCSPNPDSETDIIDHDEN 455
+SE+ + S Q+ S+ + +L S SDN+ C SD+EK+ + ET + D N
Sbjct: 696 ESESESDSDQDSIYSISTQELS--SVISDND--FCDSDNEKVANNNRTVGETFLNDSRNN 751
Query: 454 NLGKRNDIIDHDENNQGKRNANEDSKVL 371
N N ++NN K+ N+ ++++
Sbjct: 752 NNNNNN-----NKNNNNKKIENDKNQLI 774
>ref|NP_703931.1| c3h4-type ring finger protein, putative [Plasmodium falciparum 3D7]
gi|23498592|emb|CAD50543.1| c3h4-type ring finger
protein, putative [Plasmodium falciparum 3D7]
Length = 449
Score = 38.1 bits (87), Expect = 0.12
Identities = 19/85 (22%), Positives = 43/85 (50%)
Frame = -2
Query: 640 FGQSENSTSSVQNIAPSLDSIKLDTDSDASDNEKKVCASDSEKIDCSPNPDSETDIIDHD 461
+G+ N T + NI+ + D + ++D + N+ + ++ + + + D E DI ++
Sbjct: 194 YGEIYNDTCTDINISTTYDQGNKEKETDVNGNKNNINITEEKAYE---HHDKEEDINANE 250
Query: 460 ENNLGKRNDIIDHDENNQGKRNANE 386
NN + ++ D++ NN N N+
Sbjct: 251 NNNCEQNANVKDNNNNNNNNNNVNK 275
>ref|NP_705510.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23615755|emb|CAD52747.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 2020
Score = 37.4 bits (85), Expect = 0.21
Identities = 24/70 (34%), Positives = 34/70 (48%)
Frame = -2
Query: 586 DSIKLDTDSDASDNEKKVCASDSEKIDCSPNPDSETDIIDHDENNLGKRNDIIDHDENNQ 407
D + D + D +D+EK D E D + D E D D DEN+ K +D D DEN+
Sbjct: 1157 DDDEKDDNDDENDDEKY--DDDDENDDEKYDDDDENDDKDDDENDDEKDDDEKDDDENDD 1214
Query: 406 GKRNANEDSK 377
+ + D K
Sbjct: 1215 NEDDDENDDK 1224
Score = 36.2 bits (82), Expect = 0.47
Identities = 21/65 (32%), Positives = 34/65 (52%)
Frame = -2
Query: 571 DTDSDASDNEKKVCASDSEKIDCSPNPDSETDIIDHDENNLGKRNDIIDHDENNQGKRNA 392
D + D D+++ D E D N D+E D D DEN+ + +D D DEN+ +
Sbjct: 1210 DENDDNEDDDENDDKDDDEDDDA--NDDNEDDNEDDDENDDDENDDNEDDDENDDKDDDD 1267
Query: 391 NEDSK 377
N+D++
Sbjct: 1268 NDDNE 1272
Score = 35.0 bits (79), Expect = 1.1
Identities = 21/65 (32%), Positives = 32/65 (48%), Gaps = 2/65 (3%)
Frame = -2
Query: 571 DTDSDASDNEKKVCASDSEKIDCSPNPDSETDIID--HDENNLGKRNDIIDHDENNQGKR 398
D D D +D+EK D ++ D + + D D D D+ N +D D DEN+ +
Sbjct: 1192 DKDDDENDDEKDDDEKDDDENDDNEDDDENDDKDDDEDDDANDDNEDDNEDDDENDDDEN 1251
Query: 397 NANED 383
+ NED
Sbjct: 1252 DDNED 1256
Score = 33.9 bits (76), Expect = 2.3
Identities = 24/70 (34%), Positives = 32/70 (45%)
Frame = -2
Query: 586 DSIKLDTDSDASDNEKKVCASDSEKIDCSPNPDSETDIIDHDENNLGKRNDIIDHDENNQ 407
D K D D + DN+ + D EK D D E D DEN+ K + D DEN+
Sbjct: 1137 DDEKHDDDDEKDDNDDEKYDDDDEKDDNDDENDDEK-YDDDDENDDEKYD---DDDENDD 1192
Query: 406 GKRNANEDSK 377
+ N+D K
Sbjct: 1193 KDDDENDDEK 1202
>ref|NP_705549.1| signal recognition particle receptor alpha subunit, putative
[Plasmodium falciparum 3D7] gi|23615794|emb|CAD52786.1|
signal recognition particle receptor alpha subunit,
putative [Plasmodium falciparum 3D7]
Length = 576
Score = 37.4 bits (85), Expect = 0.21
Identities = 23/87 (26%), Positives = 42/87 (47%), Gaps = 5/87 (5%)
Frame = -2
Query: 625 NSTSSVQ-----NIAPSLDSIKLDTDSDASDNEKKVCASDSEKIDCSPNPDSETDIIDHD 461
NS S+V+ N + ++K+ + + +KV D K+D S N D++ +
Sbjct: 158 NSNSTVEDDDDENTVKNKKNVKVKKTAREWELSQKVTKRDIRKLDYSKNEDND------N 211
Query: 460 ENNLGKRNDIIDHDENNQGKRNANEDS 380
NN K N++ +++ NN N N D+
Sbjct: 212 NNNNNKNNEMYNNNNNNNNNNNNNNDN 238
>ref|NP_702215.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23497395|gb|AAN36939.1|AE014821_26 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 8094
Score = 37.0 bits (84), Expect = 0.28
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = -2
Query: 544 EKKVCASDSEKIDCSPNPDSETDIIDHDENNLGKRNDIIDHDENNQGKRNANED 383
E V +S I N D + + IDHD+NN+ +D I+HD++N + N D
Sbjct: 6076 ENSVEKGNSNDIMSDDNIDHDDNNIDHDDNNIDHDDDNINHDDDNINHDDDNID 6129
Score = 36.2 bits (82), Expect = 0.47
Identities = 17/39 (43%), Positives = 24/39 (60%), Gaps = 1/39 (2%)
Frame = -2
Query: 523 DSEKIDCSPNP-DSETDIIDHDENNLGKRNDIIDHDENN 410
D ID N D + D I+HD++N+ +D IDHD+NN
Sbjct: 6096 DDNNIDHDDNNIDHDDDNINHDDDNINHDDDNIDHDDNN 6134
Score = 35.0 bits (79), Expect = 1.1
Identities = 16/46 (34%), Positives = 27/46 (57%)
Frame = -2
Query: 547 NEKKVCASDSEKIDCSPNPDSETDIIDHDENNLGKRNDIIDHDENN 410
N+KK+ ++ + N D IDHD+NN+ ++ IDHD++N
Sbjct: 6068 NKKKLLNMENSVEKGNSNDIMSDDNIDHDDNNIDHDDNNIDHDDDN 6113
Score = 32.7 bits (73), Expect = 5.2
Identities = 16/70 (22%), Positives = 36/70 (50%)
Frame = -2
Query: 586 DSIKLDTDSDASDNEKKVCASDSEKIDCSPNPDSETDIIDHDENNLGKRNDIIDHDENNQ 407
D + + ++D + N + ++EK D + N + + + D+ N ND+ ++EN+
Sbjct: 7031 DDVNQNNENDVNQNNEDDVNQNNEK-DVNQNNKEDVNQNNKDDVNQNNENDVNQNNENDV 7089
Query: 406 GKRNANEDSK 377
+ N N+ +K
Sbjct: 7090 NQNNENDVNK 7099
Score = 32.3 bits (72), Expect = 6.8
Identities = 14/38 (36%), Positives = 24/38 (62%)
Frame = -2
Query: 496 NPDSETDIIDHDENNLGKRNDIIDHDENNQGKRNANED 383
N D + + IDHD++N+ +D I+HD++N + N D
Sbjct: 6099 NIDHDDNNIDHDDDNINHDDDNINHDDDNIDHDDNNID 6136
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 528,717,687
Number of Sequences: 1393205
Number of extensions: 10463129
Number of successful extensions: 44311
Number of sequences better than 10.0: 219
Number of HSP's better than 10.0 without gapping: 27492
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38168
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 33499052993
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
