Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000837A_C01 KMC000837A_c01
(557 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB71852.1| kinesin-related protein [Arabidopsis thaliana] g... 158 4e-38
gb|AAM13881.1| putative kinesin [Arabidopsis thaliana] 158 4e-38
ref|NP_565510.1| kinesin-related protein; protein id: At2g21380.... 149 2e-35
gb|AAG13527.1|AC068924_32 kinesin-like protein [Oryza sativa (ja... 139 2e-32
ref|NP_195616.1| kinesin-related protein; protein id: At4g39050.... 107 1e-22
>dbj|BAB71852.1| kinesin-related protein [Arabidopsis thaliana]
gi|23297817|gb|AAN13032.1| putative kinesin protein
[Arabidopsis thaliana]
Length = 1055
Score = 158 bits (400), Expect = 4e-38
Identities = 73/84 (86%), Positives = 76/84 (89%)
Frame = -1
Query: 554 ELPKEEPLVVRLKARMQEMKEKELKHLGNGDANSHVCKVCFESSTAAILLPCRHFCLCKS 375
E PKEEPLV RLKARMQEMKEKE+K NGDANSH+CKVCFES TAAILLPCRHFCLCKS
Sbjct: 972 ETPKEEPLVARLKARMQEMKEKEMKSQANGDANSHICKVCFESPTAAILLPCRHFCLCKS 1031
Query: 374 CSLACSECPICRTSIADRLFAFTS 303
CSLACSECPICRT I+DRLFAF S
Sbjct: 1032 CSLACSECPICRTKISDRLFAFPS 1055
>gb|AAM13881.1| putative kinesin [Arabidopsis thaliana]
Length = 1055
Score = 158 bits (400), Expect = 4e-38
Identities = 73/84 (86%), Positives = 76/84 (89%)
Frame = -1
Query: 554 ELPKEEPLVVRLKARMQEMKEKELKHLGNGDANSHVCKVCFESSTAAILLPCRHFCLCKS 375
E PKEEPLV RLKARMQEMKEKE+K NGDANSH+CKVCFES TAAILLPCRHFCLCKS
Sbjct: 972 ETPKEEPLVARLKARMQEMKEKEMKSQANGDANSHICKVCFESPTAAILLPCRHFCLCKS 1031
Query: 374 CSLACSECPICRTSIADRLFAFTS 303
CSLACSECPICRT I+DRLFAF S
Sbjct: 1032 CSLACSECPICRTKISDRLFAFPS 1055
>ref|NP_565510.1| kinesin-related protein; protein id: At2g21380.1, supported by cDNA:
gi_14532683 [Arabidopsis thaliana]
gi|14532684|gb|AAK64143.1| putative kinesin heavy chain
[Arabidopsis thaliana] gi|20197911|gb|AAD23684.2|
putative kinesin heavy chain [Arabidopsis thaliana]
gi|23297548|gb|AAN12893.1| putative kinesin heavy chain
[Arabidopsis thaliana]
Length = 1058
Score = 149 bits (376), Expect = 2e-35
Identities = 71/88 (80%), Positives = 74/88 (83%), Gaps = 4/88 (4%)
Frame = -1
Query: 554 ELPKEEPLVVRLKARMQEMKEKELKH----LGNGDANSHVCKVCFESSTAAILLPCRHFC 387
E PKEEPLV RLKARMQEMKEKE+K N DANSH+CKVCFES TA ILLPCRHFC
Sbjct: 971 ETPKEEPLVARLKARMQEMKEKEMKSQAAAAANADANSHICKVCFESPTATILLPCRHFC 1030
Query: 386 LCKSCSLACSECPICRTSIADRLFAFTS 303
LCKSCSLACSECPICRT I+DRLFAF S
Sbjct: 1031 LCKSCSLACSECPICRTKISDRLFAFPS 1058
>gb|AAG13527.1|AC068924_32 kinesin-like protein [Oryza sativa (japonica cultivar-group)]
Length = 859
Score = 139 bits (351), Expect = 2e-32
Identities = 62/81 (76%), Positives = 71/81 (87%)
Frame = -1
Query: 548 PKEEPLVVRLKARMQEMKEKELKHLGNGDANSHVCKVCFESSTAAILLPCRHFCLCKSCS 369
P+ EPL+VRLKA++QEMKEKE LG+ D NSHVCKVCFES+TAA+LLPCRHFCLCK CS
Sbjct: 779 PEFEPLLVRLKAKIQEMKEKETDSLGDKDGNSHVCKVCFESATAAVLLPCRHFCLCKPCS 838
Query: 368 LACSECPICRTSIADRLFAFT 306
LACSECP+CRT IADR+ FT
Sbjct: 839 LACSECPLCRTRIADRIITFT 859
>ref|NP_195616.1| kinesin-related protein; protein id: At4g39050.1 [Arabidopsis
thaliana] gi|7485795|pir||T06065 hypothetical protein
F19H22.150 - Arabidopsis thaliana
gi|4539324|emb|CAB38825.1| kinesin like protein
[Arabidopsis thaliana] gi|7270888|emb|CAB80568.1| kinesin
like protein [Arabidopsis thaliana]
Length = 1121
Score = 107 bits (267), Expect = 1e-22
Identities = 51/60 (85%), Positives = 53/60 (88%)
Frame = -1
Query: 554 ELPKEEPLVVRLKARMQEMKEKELKHLGNGDANSHVCKVCFESSTAAILLPCRHFCLCKS 375
E PKEEPLV RLKARMQEMKEKE+K NGDANSH+CKVCFES TAAILLPCRHFC CKS
Sbjct: 1043 ETPKEEPLVARLKARMQEMKEKEMKSQANGDANSHICKVCFESPTAAILLPCRHFC-CKS 1101
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 481,045,441
Number of Sequences: 1393205
Number of extensions: 10160146
Number of successful extensions: 29499
Number of sequences better than 10.0: 571
Number of HSP's better than 10.0 without gapping: 28220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29371
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
