Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000829A_C01 KMC000829A_c01
(627 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_200276.1| putative protein; protein id: At5g54650.1, supp... 139 3e-32
gb|AAK68741.1| Unknown protein [Arabidopsis thaliana] gi|2213649... 138 7e-32
ref|NP_193254.1| hypothetical protein [Arabidopsis thaliana] gi|... 122 3e-27
gb|AAN64319.1| formin I2I isoform; I-2Int4 [Lycopersicon esculen... 119 2e-26
gb|AAC32145.1| hypothetical protein [Picea mariana] 77 2e-13
>ref|NP_200276.1| putative protein; protein id: At5g54650.1, supported by cDNA:
gi_14596026 [Arabidopsis thaliana]
gi|9758957|dbj|BAB09344.1| contains similarity to unknown
protein~gb|AAF64546.1~gene_id:MRB17.15 [Arabidopsis
thaliana]
Length = 900
Score = 139 bits (350), Expect = 3e-32
Identities = 69/125 (55%), Positives = 92/125 (73%), Gaps = 2/125 (1%)
Frame = -1
Query: 618 EDRGXYEKVGSFVKNAEVDVMNLMEEEKKIMALVKSTGDYFHGNTRKDEGLRLFVVVRDF 439
E+ G E + F++NAE +M+++EEEK+IMALVKSTGDYFHG KDEGLRLFV+VRDF
Sbjct: 776 EESGFREALEDFIQNAEGSIMSILEEEKRIMALVKSTGDYFHGKAGKDEGLRLFVIVRDF 835
Query: 438 LIMVDKVCNEVRIAQKKPAKTLKQEASQGSSSSQT--RPPPSDFRQRLFPAIAERRMDDD 265
LI++DK C EVR A+ +P + +++ S S+SS+T + P D RQ+LFPAI ERR+D
Sbjct: 836 LIILDKSCKEVREARGRPVRMARKQGSTASASSETPRQTPSLDPRQKLFPAITERRVDQS 895
Query: 264 MSSDD 250
S D
Sbjct: 896 SSDSD 900
>gb|AAK68741.1| Unknown protein [Arabidopsis thaliana] gi|22136490|gb|AAM91323.1|
unknown protein [Arabidopsis thaliana]
Length = 900
Score = 138 bits (347), Expect = 7e-32
Identities = 69/125 (55%), Positives = 91/125 (72%), Gaps = 2/125 (1%)
Frame = -1
Query: 618 EDRGXYEKVGSFVKNAEVDVMNLMEEEKKIMALVKSTGDYFHGNTRKDEGLRLFVVVRDF 439
E G E + F++NAE +M+++EEEK+IMALVKSTGDYFHG KDEGLRLFV+VRDF
Sbjct: 776 EGSGFREALEDFIQNAEGSIMSILEEEKRIMALVKSTGDYFHGKAGKDEGLRLFVIVRDF 835
Query: 438 LIMVDKVCNEVRIAQKKPAKTLKQEASQGSSSSQT--RPPPSDFRQRLFPAIAERRMDDD 265
LI++DK C EVR A+ +P + +++ S S+SS+T + P D RQ+LFPAI ERR+D
Sbjct: 836 LIILDKSCKEVREARGRPVRMARKQGSTASASSETPRQTPSLDPRQKLFPAITERRVDQS 895
Query: 264 MSSDD 250
S D
Sbjct: 896 SSDSD 900
>ref|NP_193254.1| hypothetical protein [Arabidopsis thaliana] gi|7485197|pir||H71415
hypothetical protein - Arabidopsis thaliana
gi|2244877|emb|CAB10298.1| hypothetical protein
[Arabidopsis thaliana] gi|7268265|emb|CAB78561.1|
hypothetical protein [Arabidopsis thaliana]
Length = 130
Score = 122 bits (307), Expect = 3e-27
Identities = 63/124 (50%), Positives = 83/124 (66%)
Frame = -1
Query: 618 EDRGXYEKVGSFVKNAEVDVMNLMEEEKKIMALVKSTGDYFHGNTRKDEGLRLFVVVRDF 439
E+ + F++ A+ D L EEE++IM LVKS+ DYFHG + K+EGLRLF +VRDF
Sbjct: 3 EESDFERALAGFIERADADFKWLKEEEERIMVLVKSSADYFHGKSAKNEGLRLFAIVRDF 62
Query: 438 LIMVDKVCNEVRIAQKKPAKTLKQEASQGSSSSQTRPPPSDFRQRLFPAIAERRMDDDMS 259
LIM++KVC EV+ K + K+E+ ++S + P DFRQRLFPAIAERRMD
Sbjct: 63 LIMLEKVCREVKETTKTTNHSGKKESEM--TTSDSNQPSPDFRQRLFPAIAERRMDSSDD 120
Query: 258 SDDE 247
SDDE
Sbjct: 121 SDDE 124
>gb|AAN64319.1| formin I2I isoform; I-2Int4 [Lycopersicon esculentum]
Length = 215
Score = 119 bits (299), Expect = 2e-26
Identities = 66/126 (52%), Positives = 84/126 (66%), Gaps = 1/126 (0%)
Frame = -1
Query: 618 EDRGXY-EKVGSFVKNAEVDVMNLMEEEKKIMALVKSTGDYFHGNTRKDEGLRLFVVVRD 442
ED + + + +F+++AE D+ ++EEEKKIM+LVKSTGDYFHGN+ KDEGLRLF VV D
Sbjct: 88 EDESKFRDTLTNFIQHAEQDITCILEEEKKIMSLVKSTGDYFHGNSGKDEGLRLFSVVSD 147
Query: 441 FLIMVDKVCNEVRIAQKKPAKTLKQEASQGSSSSQTRPPPSDFRQRLFPAIAERRMDDDM 262
FLIM+DK C VR + K P K K+ S D R++LFPAI ER+M
Sbjct: 148 FLIMLDKACTVVRNSTKLPVKIPKKGTLTSPSQESCPESLQDIRKQLFPAIQERQMHYS- 206
Query: 261 SSDDES 244
SSDDES
Sbjct: 207 SSDDES 212
>gb|AAC32145.1| hypothetical protein [Picea mariana]
Length = 117
Score = 76.6 bits (187), Expect = 2e-13
Identities = 47/125 (37%), Positives = 69/125 (54%), Gaps = 5/125 (4%)
Frame = -1
Query: 603 YEKVGSFVKNAEVDVMNLMEEEKKIMALVKSTGDYFHGNTRKDEG--LRLFVVVRDFLIM 430
++ + SF++ AE D+ + EE + +LV+ T +YFHG+ K+EG LR FVVV+DFL +
Sbjct: 5 FKSMSSFLQEAEEDIARIQSEENRAFSLVRETTEYFHGDAAKEEGRPLRFFVVVKDFLGV 64
Query: 429 VDKVCNEVRIAQKKPAKTLKQEASQGSSSSQTRPP---PSDFRQRLFPAIAERRMDDDMS 259
+D+VC E+ + + A+ S RPP LFP +RR D S
Sbjct: 65 LDQVCREIGKTRTRMAQ------------SSPRPPQVVAHAISMPLFPKALQRRPD---S 109
Query: 258 SDDES 244
SDDES
Sbjct: 110 SDDES 114
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 490,666,873
Number of Sequences: 1393205
Number of extensions: 9864552
Number of successful extensions: 24628
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 23769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24579
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25586195130
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
