Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000812A_C01 KMC000812A_c01
(497 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181282.1| nodulin-like protein; protein id: At2g37460.1, ... 47 1e-04
gb|AAM62850.1| nodulin-like protein [Arabidopsis thaliana] 45 3e-04
gb|AAO60157.1| putative nodulin protein [Gossypium hirsutum] 45 4e-04
dbj|BAB92159.1| OSJNBa0016I09.11 [Oryza sativa (japonica cultiva... 45 6e-04
dbj|BAB92246.1| nodulin-like protein [Oryza sativa (japonica cul... 44 0.001
>ref|NP_181282.1| nodulin-like protein; protein id: At2g37460.1, supported by cDNA:
16393., supported by cDNA: gi_14334857, supported by
cDNA: gi_14994252, supported by cDNA: gi_17104640
[Arabidopsis thaliana] gi|25408556|pir||A84793
nodulin-like protein [imported] - Arabidopsis thaliana
gi|4056506|gb|AAC98072.1| nodulin-like protein
[Arabidopsis thaliana] gi|14334858|gb|AAK59607.1|
putative nodulin protein [Arabidopsis thaliana]
gi|14994253|gb|AAK73261.1| nodulin-like protein
[Arabidopsis thaliana] gi|17104641|gb|AAL34209.1|
putative nodulin protein [Arabidopsis thaliana]
Length = 380
Score = 47.0 bits (110), Expect = 1e-04
Identities = 21/51 (41%), Positives = 32/51 (62%)
Frame = -1
Query: 479 YIGSIIGAVLIVCGLYAVIWVKSKEMKMNTVLVSSNESDRVEIVLRSTGSE 327
Y+G ++GAV+I GLY VIW K K+ K N+ L +ES + ++ L G +
Sbjct: 307 YLGRVLGAVVICAGLYLVIWGKGKDYKYNSTLQLDDESAQPKLELSGNGKD 357
>gb|AAM62850.1| nodulin-like protein [Arabidopsis thaliana]
Length = 362
Score = 45.4 bits (106), Expect = 3e-04
Identities = 20/51 (39%), Positives = 32/51 (62%)
Frame = -1
Query: 479 YIGSIIGAVLIVCGLYAVIWVKSKEMKMNTVLVSSNESDRVEIVLRSTGSE 327
Y+G ++GAV+I GLY VIW K K+ K N+ L ++S + ++ L G +
Sbjct: 289 YLGRVLGAVVICAGLYLVIWGKGKDYKYNSTLQLDDKSAQPKLELSGNGKD 339
>gb|AAO60157.1| putative nodulin protein [Gossypium hirsutum]
Length = 374
Score = 45.1 bits (105), Expect = 4e-04
Identities = 23/52 (44%), Positives = 33/52 (63%)
Frame = -1
Query: 479 YIGSIIGAVLIVCGLYAVIWVKSKEMKMNTVLVSSNESDRVEIVLRSTGSEE 324
Y+G+++G++LIV GLYAV+W K KEMK + NE E V+ G+ E
Sbjct: 304 YVGTVVGSLLIVGGLYAVLWGKDKEMKQ----MKGNEKGGEEQVVVEEGAVE 351
>dbj|BAB92159.1| OSJNBa0016I09.11 [Oryza sativa (japonica cultivar-group)]
Length = 351
Score = 44.7 bits (104), Expect = 6e-04
Identities = 21/56 (37%), Positives = 31/56 (54%)
Frame = -1
Query: 479 YIGSIIGAVLIVCGLYAVIWVKSKEMKMNTVLVSSNESDRVEIVLRSTGSEENSNS 312
++GS++G VL+V GLY+V+W KSKE TV E D + S ++ S
Sbjct: 282 HLGSVVGGVLMVAGLYSVLWGKSKEHDTLTVAAGQQEEDAAAPPAAESSSSSDNES 337
>dbj|BAB92246.1| nodulin-like protein [Oryza sativa (japonica cultivar-group)]
Length = 398
Score = 43.9 bits (102), Expect = 0.001
Identities = 23/69 (33%), Positives = 36/69 (51%)
Frame = -1
Query: 479 YIGSIIGAVLIVCGLYAVIWVKSKEMKMNTVLVSSNESDRVEIVLRSTGSEENSNSNGIQ 300
Y+G ++GAVLIV GLY+V+W K KE + E D + L ++
Sbjct: 317 YLGGVLGAVLIVVGLYSVLWGKHKE---------TQEQDAAMMELPVASKGNDAEFTAAT 367
Query: 299 VIRDDEDSS 273
V+ DD+D++
Sbjct: 368 VVGDDDDAA 376
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 393,440,088
Number of Sequences: 1393205
Number of extensions: 7700839
Number of successful extensions: 19027
Number of sequences better than 10.0: 113
Number of HSP's better than 10.0 without gapping: 18362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19013
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14783057727
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
