Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC000809A_C02 KMC000809A_c02
(512 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564662.1| expressed protein; protein id: At1g54570.1, sup... 124 6e-28
ref|NP_566801.1| expressed protein; protein id: At3g26840.1, sup... 107 6e-23
ref|NP_198929.1| putative protein; protein id: At5g41130.1 [Arab... 101 6e-21
ref|NP_198928.2| putative protein; protein id: At5g41120.1, supp... 100 8e-21
dbj|BAB09714.1| gb|AAC64874.1~gene_id:MEE6.19~strong similarity ... 100 8e-21
>ref|NP_564662.1| expressed protein; protein id: At1g54570.1, supported by cDNA:
25383. [Arabidopsis thaliana] gi|25405748|pir||G96587
hypothetical protein T22H22.2 [imported] - Arabidopsis
thaliana gi|3776557|gb|AAC64874.1| Contains similarity
to gi|2924495 hypothetical protein Rv1920 from
Mycobacterium tuberculosis genome gb|AL022020.
[Arabidopsis thaliana] gi|21554386|gb|AAM63493.1|
unknown [Arabidopsis thaliana]
gi|26452000|dbj|BAC43090.1| unknown protein [Arabidopsis
thaliana] gi|29029028|gb|AAO64893.1| At1g54570
[Arabidopsis thaliana]
Length = 704
Score = 124 bits (311), Expect = 6e-28
Identities = 60/120 (50%), Positives = 87/120 (72%), Gaps = 2/120 (1%)
Frame = -3
Query: 510 NDYLREV--NSNQVRLRDETSGEVANQNISFPVVRPKIPNSGRFYYLFGKPIRTQGMENM 337
NDY+ EV ++ Q +LR+E+ GEVANQ + P + PK+P GRFYYLFGKPI T+G +
Sbjct: 589 NDYITEVTRDTKQFKLREESEGEVANQPLYLPGLIPKVP--GRFYYLFGKPIETKGRPEL 646
Query: 336 LKDRDSANELYLQIKSQVEQNLDYLIKKREEDPYRNLIDRKIYEAINPHDETHPTPAFEP 157
+KD++ AN++YL++K++VE ++ YL+KKREEDPYR+++DR Y H P+FEP
Sbjct: 647 VKDKEEANQVYLEVKAEVENSIAYLLKKREEDPYRSVLDRLNYSL--THTTATHVPSFEP 704
>ref|NP_566801.1| expressed protein; protein id: At3g26840.1, supported by cDNA:
gi_13430465, supported by cDNA: gi_15810662 [Arabidopsis
thaliana] gi|9279674|dbj|BAB01231.1|
gb|AAC64874.1~gene_id:MDJ14.16~strong similarity to
unknown protein [Arabidopsis thaliana]
gi|13430466|gb|AAK25855.1|AF360145_1 unknown protein
[Arabidopsis thaliana] gi|15810663|gb|AAL07256.1|
unknown protein [Arabidopsis thaliana]
Length = 701
Score = 107 bits (268), Expect = 6e-23
Identities = 54/112 (48%), Positives = 71/112 (63%)
Frame = -3
Query: 507 DYLREVNSNQVRLRDETSGEVANQNISFPVVRPKIPNSGRFYYLFGKPIRTQGMENMLKD 328
D + + + +R+ E+ NQ FP + PKIP GRFYY FGKPI T G E LKD
Sbjct: 589 DLMEKATKDAGNIREGDESELGNQECYFPGLVPKIP--GRFYYYFGKPIETAGKEKELKD 646
Query: 327 RDSANELYLQIKSQVEQNLDYLIKKREEDPYRNLIDRKIYEAINPHDETHPT 172
++ A ELYLQ+KS+VEQ +DYL KRE DPYR+L+ R +Y+A + PT
Sbjct: 647 KEKAQELYLQVKSEVEQCIDYLKVKRESDPYRHLLPRMLYQASHGWSSEIPT 698
>ref|NP_198929.1| putative protein; protein id: At5g41130.1 [Arabidopsis thaliana]
gi|9759159|dbj|BAB09715.1|
gb|AAC64874.1~gene_id:MEE6.20~strong similarity to
unknown protein [Arabidopsis thaliana]
Length = 702
Score = 101 bits (251), Expect = 6e-21
Identities = 51/118 (43%), Positives = 77/118 (65%)
Frame = -3
Query: 501 LREVNSNQVRLRDETSGEVANQNISFPVVRPKIPNSGRFYYLFGKPIRTQGMENMLKDRD 322
++E++ + LR+ GEV NQ++ P + PK+P GRFY FGKPI T+G E+ L D++
Sbjct: 589 IKELSQDSTYLRNGEEGEVGNQDLHMPGIVPKMP--GRFYVYFGKPIYTEGREDELNDKE 646
Query: 321 SANELYLQIKSQVEQNLDYLIKKREEDPYRNLIDRKIYEAINPHDETHPTPAFEP*NE 148
A+E+YLQ+KS+VE+ + YL KRE DPYRN++ R +Y H + P F+ N+
Sbjct: 647 KAHEVYLQVKSEVERCMTYLKIKREGDPYRNILARSLYHF--SHGFSSQVPTFDLRNQ 702
>ref|NP_198928.2| putative protein; protein id: At5g41120.1, supported by cDNA:
gi_17979136, supported by cDNA: gi_20465348 [Arabidopsis
thaliana] gi|17979137|gb|AAL49826.1| unknown protein
[Arabidopsis thaliana] gi|20465349|gb|AAM20078.1|
unknown protein [Arabidopsis thaliana]
Length = 684
Score = 100 bits (250), Expect = 8e-21
Identities = 48/110 (43%), Positives = 72/110 (64%)
Frame = -3
Query: 501 LREVNSNQVRLRDETSGEVANQNISFPVVRPKIPNSGRFYYLFGKPIRTQGMENMLKDRD 322
+ E+ + V LR++ GE+ Q++ P + PKIP GRFY FGKPI T+G E L +++
Sbjct: 571 IEEITQDSVNLRNDEEGELGKQDLHLPGIVPKIP--GRFYAYFGKPIDTEGREKELNNKE 628
Query: 321 SANELYLQIKSQVEQNLDYLIKKREEDPYRNLIDRKIYEAINPHDETHPT 172
A+E+YLQ+KS+VE+ ++YL KRE DPYRN++ R +Y + PT
Sbjct: 629 KAHEVYLQVKSEVERCMNYLKIKRETDPYRNILPRSLYYLTHGFSSQIPT 678
>dbj|BAB09714.1| gb|AAC64874.1~gene_id:MEE6.19~strong similarity to unknown protein
[Arabidopsis thaliana]
Length = 689
Score = 100 bits (250), Expect = 8e-21
Identities = 48/110 (43%), Positives = 72/110 (64%)
Frame = -3
Query: 501 LREVNSNQVRLRDETSGEVANQNISFPVVRPKIPNSGRFYYLFGKPIRTQGMENMLKDRD 322
+ E+ + V LR++ GE+ Q++ P + PKIP GRFY FGKPI T+G E L +++
Sbjct: 576 IEEITQDSVNLRNDEEGELGKQDLHLPGIVPKIP--GRFYAYFGKPIDTEGREKELNNKE 633
Query: 321 SANELYLQIKSQVEQNLDYLIKKREEDPYRNLIDRKIYEAINPHDETHPT 172
A+E+YLQ+KS+VE+ ++YL KRE DPYRN++ R +Y + PT
Sbjct: 634 KAHEVYLQVKSEVERCMNYLKIKRETDPYRNILPRSLYYLTHGFSSQIPT 683
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 445,640,815
Number of Sequences: 1393205
Number of extensions: 9453600
Number of successful extensions: 20739
Number of sequences better than 10.0: 34
Number of HSP's better than 10.0 without gapping: 20228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20728
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
